Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423244
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Entry
139423244 CDS
T10872
Name
(RefSeq) remodeling and spacing factor 1-like isoform X1
KO
K11657
remodeling and spacing factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139423244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139423244
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
139423244
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WHIM1
PHD
DDT
WSD
Motif
Other DBs
NCBI-GeneID:
139423244
NCBI-ProteinID:
XP_071031150
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All DBs
Position
12:45818643..45866117
Genome browser
AA seq
2018 aa
AA seq
DB search
MAASAPSVGFSDLCPSYAVICSFLERYGALLDLPELTFPQLERYLQDTSSVPKLLVDLHV
KLLRKIGKSVSADRWEKYIVKVCHEFNSTWAWELENKGYKDMSVECKTGILKHLCECQFD
DNVKFKTAINEEDPDKMRLHPIGKDKDGLMYWFQLDQDNNVRVYVEEQDDLDGSSWKCIV
RDRNSLAEILAQLKTQIDPALLTKKEGEEEDENKKTGGEGEIKKTEDTSGDEEDKLSKDT
ASLVSPKTDNTERKSPKEESKLDESDVKSPSNGLKDNQVESESTRQSEKPMVDDKATINT
QAIKEELMEVSESKESTATSATEPLAEKHCVTPQTEQTEEAKRKTAEELQRVMKNDQQAK
IPLKKREMKLSEDFDNSSGGGSRIIVRNPSVAPVKEAPKVEETSKEVSVALVGTMETKSD
QVNGDAQPVTEKSVNKGMRESPKEMGIQRESADSKEQQTKAVAREECEAAEASEKEKTNL
SLDMDKKEGEMASNAEEPMEVAMADETNLQKTVPAPKAEKESTEALNKSSLKEAKSSSPL
TKPLTSSKDATCTPEKSSDLKEEQKVKVSKWDVKVRRTEHKTSTSIETDKNPLSSKSQKP
DETKGTDSSIAFQEVNLSAFKETIVPKDSCPLSVVKEMEKTSIIKATEKLLNPKNPETSV
ITKQTERPDPITDKPESSKRPESPAVIKNTENPSNKESAEKCDGSNDIKTSSVIKKTEIS
EKSKDAKNLASSKETNTSSLLKKADKPVPNKEAEKLESTKETNKSLVIKMTVKPEASKHT
EKCDTTKDIMSALTKEKPAVSAVSTNTNVAPEVKKKNVLEKNSKKTAICKDETRAVAAVT
ETQSGPKDMEMADIFEKSNQSQLEGPKKVEKLGIPKDTLKSIMPKYAEKSAKLATPKDAE
KLATPKDAEKLATPKDAEKMATPKDAEKMATPKDAEKMSTPKDAEKMATPKDAEKMATPK
DAEKMATPKDAEKMATPKDAEKLATPKDAEKLATPKDAEKLATPKDAEKLATPKDAEKLA
TPKDTEKLVTPKDAEKLPKSAMSENAGKSATPTDAENSAKSAIPIPEDTEILATPEEAEK
SVNTKDTEKSATLKNTETASKKIEDFTICEGQKPDASKETEKLADIMPAAAKGEKHVAFE
DSKQLPSVKESVPVGRKQEEPMEISSEKSTDDNVIIRGHADKGWTKKSVKSGENSESEPI
KDSNRMDCNAPSEKQATSKKALSLTDAEGETDKSQVKVIKEDATTQGCPKEDEKEDDQAK
KNDQKEDDGAEKDNSTAAEKLGEAKASKGSENKEEEKKDAGTTSEIQEEGIRLKIRGITH
RRRAELQRTERDSGSDTGETGRSLRRSPRICRPTAKGVEFQDRRLEKKETTPPEEEEDEE
EETVQRKPREKVDQDGQSKSKGRRRRKTRWSNTRTRRRKKNGSGDDNESESSEEESEEDD
SDESFKVEKGKRRWRNRNRERHSDDSDTSSDDDLPPNEDPCKHCGLPNHPELILLCDSCD
SGYHTACLRPPLMIIPDGEWFCSPCQHKLLCDKLEEQLANLDAALKKRDRAERRKERLVY
VGISVENIITPSLEVEEEKEEEREEEVKKEKKEKKEKSKSWGRRSTRAKKSISYRFDEFD
EAIEEAIEEDIREADGGGAGRGKDMANITGHSRGKDMSTILAAGEVGEGKENGRPPRPNA
GQRRKKRRRLNDLDSDSTVEEEESEDEFRLSDSTEEEEFVASDKSDAESEAAVNSNDDSD
FGSTRRRTARTRRPAKCQRSTRPRRRRRARGYSDDEEEETSDEDEDEIMSEGSSEFSDSD
LDCSQRRSRRSHTKRQVNYCESSGDSDGSKAGTNRDKVKPRRRLASSDSEASSSRGSDDG
KRERTRLKRRADSSEEESQQRRRRLSLKRRRASEEDDDDSDESSEGERPVRKRVNRIDSD
DSDKEEEKEETKEEEEGGVLGKGASPLDYNLVELHPPTNGQSPIKALEGLAHIGPQKPGA
TAVTIAPNGLELAPQDDDEDDLLGVTDLVDFVCNSDVL
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcggctccatcggtgggtttctccgatttgtgcccaagctacgccgtgata
tgctcttttctagagcgttatggagctttgctggatctaccggagctcacatttccgcag
ttggagagatatctccaagacacatcttcagttccaaagctcttggtggaccttcatgtg
aagttgctgaggaagattggcaagtcggtgtccgcagacagatgggaaaagtacattgtg
aaggtgtgccatgagttcaacagtacctgggcatgggaacttgaaaataaaggatacaaa
gacatgtctgtggagtgtaagactggaatcctcaaacacttatgtgagtgccagtttgat
gacaatgtcaagttcaagactgcaattaatgaggaggatcctgataagatgcggctccat
cccattggcaaggacaaggatggcctaatgtactggttccaacttgaccaggataacaat
gtgagggtctatgtggaggagcaggacgacctggacgggtcctcctggaagtgcattgtc
agagacagaaacagcttggctgagatcctggcacagctgaagactcaaatcgacccagca
ctgttgacaaagaaagaaggagaggaggaagatgagaacaagaagactggcggagaaggg
gaaattaaaaagacagaggatacctccggggatgaagaggacaaactctccaaggataca
gcttctttagtgtccccaaaaacagataatacagaaagaaaatccccaaaagaggaatcg
aagctggacgaatcagatgtcaaatccccatcgaatggcctcaaagacaaccaagtcgag
tcagagtcaacaagacaatccgagaagccaatggtggatgacaaggccaccattaacacc
caggccatcaaagaagagctgatggaggtgtcagaatccaaggagagcacagccacaagt
gctacagagcctcttgcggagaaacattgtgtgacgccacagacagaacagactgaggaa
gccaagaggaagactgcagaggaactccaaagggtgatgaagaatgaccagcaggccaaa
atccccttgaaaaagagagagatgaaacttagtgaagattttgataatagtagtggcggt
ggcagtagaatcattgtgcgtaacccatctgttgctcctgtcaaagaagctcctaaagtt
gaggagacaagtaaagaggtctctgttgccctggtggggacgatggagactaaaagtgat
caagtgaatggtgatgctcagcctgtcacagaaaaaagtgtcaataagggaatgagagaa
tctcctaaagagatgggaatacagagagaatctgctgatagcaaagaacagcaaacaaaa
gctgttgctagggaagaatgtgaagcagcagaagctagtgaaaaagagaaaacaaatctg
tccctggacatggacaaaaaggaaggggagatggcaagcaatgctgaggagcccatggag
gtggccatggccgatgaaactaacctacagaaaactgttccagccccaaaggcagagaag
gaaagcactgaagcactgaataaatcatccctaaaagaggctaaatcttcatcccctctg
acaaagccattgacttcatctaaggatgcaacatgcacaccggaaaagtcctctgatctt
aaagaggaacaaaaagtcaaggtatccaagtgggatgtgaaagtgcgtcgtacagaacac
aagacatccacatcaatagaaacagataaaaaccctttatctagtaagtcacagaaacca
gatgaaactaaaggaacagattcatccattgcatttcaagaggtaaatttgtctgccttt
aaggaaacaattgtccctaaagacagttgtcccctttctgtagtgaaagagatggaaaaa
acatccatcataaaagccacagaaaagttgttgaaccctaaaaacccagaaacatcagtc
atcactaaacaaaccgagagacctgatcccattacagataaaccagaaagctcaaaacgc
cctgagtcgccagcagtcataaaaaatacagagaatccatctaacaaagagagcgcagag
aaatgtgatggttctaatgatatcaaaacatcttctgtcattaaaaagacagagatttca
gaaaagagtaaagatgccaagaacctggccagctctaaagagaccaatacgtcctcatta
cttaaaaaggcagacaaaccagttcccaataaagaagcagagaaactggagagcactaaa
gagactaataaatcgttggtcattaaaatgacagtgaaaccagaggcatctaaacataca
gagaaatgtgataccactaaagacattatgtcagctctcaccaaggagaaacctgctgtc
agtgctgtaagcacaaatacaaatgttgcccctgaggtgaagaaaaaaaacgtcctggag
aaaaactctaagaaaacagccatctgtaaagatgagacgagagctgttgcagcagtgact
gagacacaatctggccctaaagacatggagatggcagacatctttgagaaatcaaaccaa
tcccaactggaaggacccaaaaaggtagagaaattgggtatccctaaagacacgttgaaa
tcgataatgcctaaatacgcagagaaatctgctaaactggctacgcctaaagacgcggag
aaattggctactcctaaagacgcagagaaattggctacgcctaaagacgcggagaaaatg
gctacgcctaaagacgcggagaaaatggctacgcctaaagacgcggagaaaatgtctacg
cctaaagacgcggagaaaatggctacgcctaaagacgcggagaaaatggctacgcctaaa
gacgcggagaaaatggctacgcctaaagacgctgagaaaatggctacgcctaaagacgca
gagaaattggctacgcctaaagacgcggagaaattggctacgcctaaagacgcggagaaa
ttggctacgcctaaagacgcggagaaattggctacgcctaaagacgcggaaaaattggct
acgcctaaagacacggagaaattggttacgcctaaagacgcggagaaattgcctaaatcg
gctatgtctgaaaatgctgggaaatctgctacccctacagacgctgagaattcagctaaa
tcagctatacctatccctgaagacacagagatattggctactcctgaagaagcggagaaa
tcggttaacactaaagacactgagaaatcggctacccttaaaaacacagagactgcttct
aaaaagattgaagatttcacaatctgtgaaggacagaaaccagatgcctctaaagaaact
gagaaactggcagacataatgccagctgcagcaaaaggagagaaacatgttgcctttgag
gattctaagcaattaccttctgtcaaagagtctgtcccagtggggaggaaacaggaagag
cctatggaaataagttcggaaaagtcaacagatgacaatgtaattattaggggacatgcc
gataaaggctggacaaagaagtcagttaaaagtggagagaattctgagagcgagcctatc
aaagactcaaaccgcatggactgtaatgcaccatcagaaaaacaggctaccagcaagaag
gcattatctctcactgatgctgaaggtgagacagacaaaagccaggtcaaagtaatcaag
gaagatgccacaacacagggatgccctaaagaggatgagaaggaagatgatcaggctaag
aaaaacgaccaaaaggaggatgatggtgctgagaaagataactcaactgcagcagagaaa
ctgggtgaggcaaaagcaagtaaagggtctgagaataaagaggaggaaaaaaaggatgca
ggaacaacatcagagattcaagaggaggggattcgcctgaaaatacggggaattactcat
cgaaggagagctgagctccagagaacggagagggactcggggtccgatactggtgagact
gggagatccctgaggaggtcacccaggatttgcaggccaaccgctaagggggtggagttc
caggacaggaggctggagaaaaaagagaccacgccccctgaggaggaagaggacgaggag
gaggaaactgttcagaggaaaccgagagaaaaggttgatcaagatggacagtccaaatct
aaggggcgacggaggagaaagacccggtggtccaacactcgaacacgacggcgcaaaaag
aatggttctggtgatgacaatgaaagcgaatcaagcgaagaggagagtgaggaggatgac
agtgatgagagctttaaggtggagaagggcaagaggaggtggaggaaccggaacagagaa
aggcacagcgacgactctgacacctcctcggatgatgacctccctcctaacgaagacccc
tgcaaacactgcggcctccccaaccatcccgagctgatcttgctatgtgactcgtgtgac
agtggctaccacacggcctgcctcagaccccctctcatgatcatcccagatggggagtgg
ttctgttcaccctgccaacataagctactctgtgacaagcttgaggagcagcttgctaat
ctcgatgctgccctgaaaaagagggatcgcgctgagcgaagaaaagaacgtttggtgtat
gttggaataagtgtcgaaaacatcatcactccctctttggaggtagaggaagaaaaggag
gaagaaagggaggaagaagtgaagaaggagaagaaagagaagaaagagaaaagcaagagc
tggggtcgaaggtcgacaagggcaaagaaaagcataagttacaggtttgatgaatttgat
gaggctatcgaggaggcaattgaagaagacatcagagaggctgatggtggaggagctggt
cggggcaaggacatggccaacatcacaggccatagcagggggaaggacatgtccaccatc
ctggcagcaggcgaggttggtgagggcaaggagaatggacgcccgccacggcccaacgcc
ggccagcgcaggaagaagcgccggcgtctcaacgacctggacagcgacagcactgtggag
gaggaggagagcgaggacgagttccgtctcagtgacagtacggaggaagaggagtttgtg
gcgtcagacaagagcgacgcagagagcgaagcggcagtcaactctaacgacgacagtgac
ttcggcagcacgcgacgcagaactgccaggacaaggaggccggccaaatgtcaaaggagc
actcggccgcgaaggcgccgcagagcgagagggtactcagacgatgaagaggaggagacg
agtgatgaagatgaggacgaaattatgtcagagggttccagcgagttcagcgacagcgac
ctggactgtagccaacgccgatcccgccgtagtcatacaaagaggcaggtcaactactgc
gagtcgtccggcgactccgatggctcaaaggccggcaccaaccgggacaaagtcaaaccg
cggaggcgcctcgccagctccgacagcgaagcaagctcctccagaggctcggacgacggc
aagagggagaggactaggttgaagaggagggctgactcgtctgaggaagagtcccagcag
cgccgcagacgcctctcgctaaaacggaggcgagcctccgaggaggacgatgacgattcc
gatgaatcatcggagggagagcgtccggtccgcaagcgtgtgaaccgcatcgactcggac
gactctgacaaggaggaggagaaggaagaaacaaaggaagaggaggaagggggggtgctg
gggaagggagccagcccattggactacaacctggtggaactgcacccccctaccaacgga
cagagtcccatcaaggccttggagggcctggctcacattgggccccaaaaacctggagcc
acagccgtcaccatagcccccaacggactggagttggcgccacaggacgatgatgaagat
gacctgctgggggtcacagacctagtggactttgtctgcaatagtgatgtgttgtaa
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integrated database retrieval system
