Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423248
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Entry
139423248 CDS
T10872
Name
(RefSeq) RNA-binding protein Nova-1-like isoform X1
KO
K14944
RNA-binding protein Nova
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139423248
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139423248
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_2nd
CST-I
DUF1233
Motif
Other DBs
NCBI-GeneID:
139423248
NCBI-ProteinID:
XP_071031156
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All DBs
Position
12:complement(45541536..45603769)
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AA seq
492 aa
AA seq
DB search
MMAVEHNGIFLKPHYHSQQYHMESVPPDSRKRPLTPTEEDCCTKRTNTGEEGEYFLKVLI
PSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNSVHSFI
AEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGKGGATVKAVMEQ
SGAWVQLSQKPEGINLQERVVTISGEPEQNCKAVEIIVQKIQEDPQSSSCLNISYSNISG
PVANSNPTGSPYANSAEVLPNAAAAAATASSLLGQAGLAGMGGFPGTMSSFSGNDLLAIT
SALNTLASYGYNTNTLGLGLNPAAASGVLAAVAASANPAAAAAANLLASYASDASGGPGH
PAVGLGGFSLGSLAAATGASNGYLNASSPLMASSLLATEKLGDGAKDVVEIAVPENLVGA
ILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRITYE
QGVRATNPQKVG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagttgaacataatgggatattcttgaaacctcattatcacagtcaacagtac
cacatggagtcggttcccccagactctcgtaaacgaccactaactccgaccgaggaagac
tgttgtaccaagcgcacaaacacgggagaggagggtgagtacttcctgaaggtgctgatc
cccagctatgcggccggctccataattggcaagggcggccagaccatcgtacagctgcag
aaagagacgggcgccaccatcaagctgtccaaatccaaagacttctacccaggaaccaca
gagcgtgtatgtctgatacagggtacagtcgaggcgctgaatagcgtccacagcttcatc
gcggaaaaagtccgtgagatgcctcagagcgcccagaaaacagagccagtcagcatactg
caaccacagaccactgtcaaccccgaccgtgtcaaacaggctaaattgattgtgcccaac
agcacggctgggctgatcatcggtaagggcggggccacggtcaaggcggtgatggagcag
tcgggtgcctgggtgcagctgtcccagaagcctgaaggcatcaacctgcaggagcgtgtg
gtcaccatcagcggggaacccgagcagaactgcaaagccgtggagatcatcgtgcagaag
atccaggaggaccctcagagcagcagctgcctcaacatcagctactccaacatctcaggc
cccgtggccaactccaaccccaccggttccccctacgccaactcagccgaggtcctcccc
aacgcagccgcggctgccgccactgcctccagccttctgggccaggccggcctggcagga
atgggcggcttcccgggcaccatgtccagcttctctggcaatgacctgctggccatcacc
tcggccctcaacactctggccagctatggctacaacaccaacaccctgggtctgggcctc
aacccggctgccgcctctggggtcctggccgccgtggctgctagcgctaacccagccgct
gctgccgccgctaacctcctggcctcctatgccagcgatgcctccggcggccccggccac
cccgctgtcggcctgggcggcttctccctgggctcgctggctgccgccacaggggcctcc
aacggctacctgaacgcctcatccccactgatggcctcttccctgctggccacagagaag
ctgggagacggggccaaggacgtggtggagattgccgtgcccgagaatctggtgggcgcc
atcctggggaaaggtggtaaaacgctggtggagtaccaggagctgacaggcgcccgcatc
cagatctccaaaaagggagagttcatccccggcacgcgaaaccgtaaagttaccataaca
gggtcgcccgcggcaacacaagctgcccagtatctgatcagccagcggatcacgtatgag
cagggtgtgcgtgccaccaacccacagaaggtgggctaa
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