Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423255
Help
Entry
139423255 CDS
T10872
Name
(RefSeq) calpain small subunit 1-like isoform X1
KO
K08583
calpain, small subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139423255
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C2: calpain family
139423255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
CAPN13-like_C_EFh
EF-hand_5
Gag_FV_central
Motif
Other DBs
NCBI-GeneID:
139423255
NCBI-ProteinID:
XP_071031165
LinkDB
All DBs
Position
12:complement(45487400..45496831)
Genome browser
AA seq
226 aa
AA seq
DB search
MFLAKRLIGGILDVVSNIDPAVFVPSDPPAPRRPLAYAEQNESDEERQFRKVFQQLAGDD
MEVSPTELMNILNRIISKHGDLKTDGFSIESCRSMVAVMDCDSTGKLGFHEFKHLWNNIK
KWQGVYKTYDTDGSGVIGADELPNAFRAAGFPLNDELFQMIIRRYSDENGNMDFDNCIGC
LVRLDAMCRAFKTLDKDNNGTIKVNVQEVSMSHLQAVTIRRFYECN
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgtttctggccaaaagactcatcggtggcattcttgatgtcgtaagcaatattgatcca
gctgtgtttgtgccctctgacccacccgcaccacgaaggccacttgcgtacgcagagcag
aatgagagtgacgaggaaagacagtttcgcaaagtcttccagcagttggctggagatgac
atggaggtgagcccaactgaattgatgaacatcttgaacagaattatttccaaacatggt
gacctgaagacagacgggtttagcattgagtcctgcaggagcatggttgcagtcatggat
tgtgacagtactgggaagctcggattccatgagttcaaacacctctggaacaatatcaag
aaatggcagggtgtgtataagacttatgatactgatggctctggggttattggtgcagat
gagcttcccaatgctttcagggcggcaggctttcccctcaatgatgagctgttccagatg
atcattcgcagatacagcgatgagaacgggaacatggactttgacaactgcattggctgc
cttgtgagactggacgctatgtgccgtgccttcaaaaccttagacaaggataacaatgga
actatcaaggtcaacgttcaagaggtaagcatgtcacacttacaagctgtaacaattaga
cggttttatgaatgtaattag
DBGET
integrated database retrieval system
