Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423267
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Entry
139423267 CDS
T10872
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04270
Vascular smooth muscle contraction
ocla04625
C-type lectin receptor signaling pathway
ocla04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
139423267
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
139423267
09153 Circulatory system
04270 Vascular smooth muscle contraction
139423267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139423267
Membrane trafficking [BR:
ocla04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
139423267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Ribonuc_2-5A
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
139423267
NCBI-ProteinID:
XP_071031184
LinkDB
All DBs
Position
12:47078562..47210648
Genome browser
AA seq
1491 aa
AA seq
DB search
MSETQSTLTDRVPKKATRTLSILSKDHPPDKKPKSDKNTVPPLQEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGSAMRAGVQTGDRIIKVNGSLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQVPLSEGEGGDPGVLSSSLSSPHSPGTMGGTGEHCSTSTSPQDHI
ISSLSLREENNAVHSQKVDILQKMLSKQQQDLQAMKEEYSRNPTAKLLKDIQEAKKHIPM
LRGQLRKATGTPQDGSLSPWDGEGGADGEQTPSSQVESGSNGIWTNITVSLSPLPESPCQ
RETPCHNPKTTPRDSLNSCPSPDAEDTPDLNCNFQCSVGNPLTCLNPQIIGAEDDYFDTE
QEQINGQCCCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRI
FMDFYTFFMDRAANLKVAVPESIASELDRRRPELIPEELHRQYTQLLQDTLLPDIQGNLE
DFRQKRSMGLTLAEGELSKLDTERVRDRVALDRERSCAEHIISKIEDVLLTSQPTEEEKC
TTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKTEKEGEDKVKKPRFPNIL
GPPRRPSRVDSTSIGKAIEMNKQRGPQKQLSQPILSIPDLPESLPRGSQSRDPGSDVATH
PSAFIASPPHSAPASQGSDPMGRDSDSGLTPSSALPRLSSDWLHSGDTQNRMAHPTSTHF
DFSPCTLDQLQEEERESDGVPEGGTPKPARRMQGLGCPDVPNEDDLGNEIECKQDSPNWQ
TLVSREVLAGLTPQEIKRQEVINELFYTERAHLRMLKVLDNVFYQKLTRDSILPPGDIKH
IFTNLEEIVQLHVSITEQVTVIRKKNETSVIDLIGDDLLAWFSDGEEEKIKRAVGTFCSN
QPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLESIAKY
TEDAAERDKVKRAGECCRKILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQSENPMISEF
KSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCHSKNLAGTA
DTKHIFSPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRTWQCLITQR
ADTMKTKPHNIIPLPQTDAERDAVEVISTGIPKLSKDPDRLSTGSIQFAEKYVTSSPGLQ
PTPTSINPFDSIKSDDKEEESPLLLDRREEEEEEVEEVDEEEVEAFLVGELADRLPLLQE
RSCQGIAIDDQEPHDAFVMPPSRAEEALRTLAALRQVLLNHMTSREEGSDKNNENRKEKE
QRKGLAHGARLLRTTSLRGPEDSNSSTSGPRSAAASSPGSSENGTAGREEGAPGSSELPS
GDTGFFETSEDYGSYIVLGGSGESSTDDDGQASGKGGARAQWGSDIDLKKLLSSSSQTGD
AGPNHSRQVITHIRLLQANLQHLKEVETKYNELRQRLSETATDTEENKDES
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacacagtcaacactcactgacagggttcccaaaaaagcaaccaggaccctt
agcattctcagcaaggaccaccccccagacaagaaacctaagagtgacaaaaacacagtc
ccacctctgcaggagtttgaccctactgggcttgtccagcgttgtgtgatcattcagaaa
gatgagaacggttttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggctctgccatgcgagcgggagtccagacgggtgataggatcatcaaggtt
aacgggagcttagtaacacattcaaaccatgtagaagtcgtaaagttaatcaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccgggactggcccaagtccccctgtca
gaaggcgagggtggagacccaggggtcctgtcgtcgtccctctcctcaccccactctccg
ggaacaatggggggaacaggggagcactgctccacctccaccagtccccaggaccacatc
atctcgtcgctgtccctccgggaggagaataacgctgtacacagccagaaggtggacatc
ttacagaagatgctgtccaagcagcagcaggacttacaggctatgaaggaggagtacagc
aggaaccccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctatg
ctacgtggccaactcagaaaggccacaggcacacctcaggatggctccctctccccctgg
gacggtgaggggggggccgatggagagcagaccccctcctcgcaggtagagagcggcagc
aatggaatctggaccaatatcactgtgtctctcagtcccctccctgagagtccgtgccaa
agagagaccccctgccataacccaaagaccaccccccgagacagcctcaactcctgcccc
tcgcctgacgccgaggacacgccggacttgaactgtaacttccagtgtagtgtgggcaac
cccttgacctgtctcaacccccagatcatcggagcagaggacgactactttgacaccgag
caggaacagatcaatggccagtgttgttgtttccagagtatagagctgctcaagtctcgg
cccgctcacctggccgccttcctccatcatgtggtctctcagtttgaccctgcacctctg
ctgtgctacctttacgccgacctgtacaagcagaccaactccaaagagaccagacggatc
ttcatggatttctatactttctttatggaccgagcagcgaatctgaaagtagctgtgcct
gagtctattgcctctgaactagatcggcggagacctgagctgatcccagaggagctacac
agacagtacacacagctgctacaggacacactgctaccagacatccaggggaacctagag
gacttcaggcaaaagcgcagcatgggtctgaccttggcagagggggagctgtctaaactg
gacacagagagggtgagagaccgcgtggcgctagatagagaacgctcctgtgccgaacac
atcatctccaagatagaggatgtcttgctgacgtcacagcccacagaagaggagaagtgc
actactatgcagtatgttatcctcacatatatgaaacacctgggagttaaagtgaaggaa
cctcgtagcctagagcccaaacgagtccgcatcaacttcctacccaagatcaagaagagc
atcaaaactgagaaagagggggaggataaggtgaagaagcctcgttttcccaacatcctc
ggccctcctcgtcggcccagccgtgtggactccacttcaatcggcaaggccatagagatg
aacaagcagcgaggccctcagaagcagctctcccagcccatcttaagcatccccgatctc
ccagaatccttgccccgcggcagccaatcaagggatccaggctcggatgtggcaacccac
ccctcggccttcatcgcatcacccccacacagtgccccagccagccagggctccgacccc
atgggacgcgattctgactcgggtctcactccctcctccgccctgcccagactgagctct
gactggctccactcgggcgacacccagaacaggatggcccacccaaccagcacccacttt
gacttcagcccctgcaccctggaccaattgcaggaggaggagcgtgagagtgacggagtt
ccagagggaggcacacccaaaccagcccggaggatgcagggtttaggctgtccagatgtg
ccgaatgaggacgacctggggaatgagatcgagtgcaagcaggactctcccaactggcag
acgctagtcagccgagaggtcctggcgggcctgacaccacaggagatcaagagacaggaa
gtcatcaacgagctgttctacacagagcgagcccacctgaggatgttgaaggttctggat
aacgtgttctaccagaaactaacccgagacagcatcctgcctcctggagacattaaacac
atctttactaacctagaggagattgtccagctacatgtgtcgataacagaacaggtgaca
gtcattcggaagaagaacgagacatcagtgatagacctgataggagacgatctactagct
tggttcagtgatggcgaggaggagaagatcaagagggcggtgggcaccttctgcagtaac
cagcccttcgccctggaactcatcaagacccggcagaagaaggaccagcgcttcacctcc
tttatgcaggaggctgagagcaaccgtctgtgtcgcagactgcagctgaaggatatcatt
ccagtggagatgcagaggctgaccaagtatccactgctgctggagagcatagccaagtac
acagaggatgcagcggagagggacaaggtgaagagggccggggagtgctgcaggaagatc
ctcaactatgtcaaccagacagtgaaagaggcagagaacaaacagaggttagaggactac
caaagacgcctggacctgtcctcactcaaacagagtgagaacccaatgatctcagagttc
aagagcctggacctgaccaagaggaagatggtgcatgagggacctctctcctggaaggtc
aacaaagacaagacaatcgagctgtacacgctgctcctggaggacatcctggtgctgctg
cagaagcaggacgagcggttggtcctcaagtgccacagcaagaacctggcgggcaccgcc
gacaccaagcacatctttagccccatcatcaagctcaacactgtgctggtgcgctcggtg
gccaccgacaacaagtccttcttcgtgctgtctatgtccgacaacggagcccagatctac
gagctaatggcccagaccgtgtctgagcaaagaacgtggcagtgtctgataacgcagagg
gcagacaccatgaagacgaaaccgcacaacatcatacctttacctcagaccgatgctgag
cgagacgcagtggaggtgatcagcacagggatacccaaactgagcaaagacccagaccgc
ctttccacgggaagtatccagttcgcagaaaaatatgtcacttcctcgcctggtctgcaa
cccacgcccacatcgatcaacccattcgacagcatcaaatcagacgacaaggaagaagag
tcgccgctactgctagacagaagagaagaggaggaggaggaagtggaggaggtagatgag
gaggaagttgaagcgtttctggttggagagctggcagacagactgcccttactccaggag
aggtcatgccaaggcattgccatcgatgaccaggagccccatgatgccttcgtcatgccc
ccctccagagccgaggaggccctaagaaccttggcagccctgaggcaggtccttctcaac
cacatgacaagcagagaggagggcagcgacaagaacaatgagaataggaaggagaaggag
cagagaaagggcttggcccatggcgcccgcctgctgaggacgacgtcactgaggggccca
gaggacagcaacagcagtacatcgggccctaggagcgcagcagcatcctctcctggctcc
tcggagaacggcacggcggggagggaggagggtgccccaggatcctcagaactcccgtct
ggggacacaggcttcttcgagacatctgaggactatggcagttacattgtcctggggggc
tcgggggagagcagcacagacgacgacggtcaggcgagtggcaagggtggagccagggcc
cagtggggctcggacatcgacctgaagaagctgctctcctcatcctcacagacaggggat
gctggccccaaccacagccgtcaggtcataacccacatccgcctgctgcaggccaacctg
caacacttgaaggaagtggaaaccaagtataatgaactgcgccaaaggctgagtgaaact
gctactgacacagaggagaacaaagatgagagttag
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integrated database retrieval system
