Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423633
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Entry
139423633 CDS
T10872
Name
(RefSeq) MHC class II transactivator-like
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ocla01001
]
139423633
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139423633
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
139423633
Protein kinases [BR:
ocla01001
]
Serine/threonine kinases: Other
TAF1 family
139423633
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139423633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
nSTAND_NTPase5
AAA_16
RsgA_GTPase
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139423633
NCBI-ProteinID:
XP_071031320
LinkDB
All DBs
Position
13:66224336..66268432
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AA seq
1251 aa
AA seq
DB search
MHGSYSGSYGGSCCVLTEGMETLDARQTGARMQDMDIMDLHPSLTPEVEDFLPELDLDGF
LEHEDFPFDFNDALFDLDFTVDIQTGEVAMPTAVAEPGDQKQNCETQRELGDGQRKRETE
LGDGQRKRGSTEAGDGQRKRRSTEPGDRQRKRAKRRAAEAGDGQRKRRATEPGDGQRKRE
TQTDSPIRGCAGSPPLSAVTLSPPPPRFVQIAPSLLYIPGFGTATFVSSCSNGSELQLVQ
APVFGFSRPPTYILMSSPSLSPRTLDVLPLSPVDGEVAPDSMCSYPPGSLSDCASQALSP
PSASPLSPRTEEYIHQAKAHLRGMCQEMEAGLSLASHYVDVRLVQRQILIGSGKNTSKCL
EKDLVVIGDAERRRGSLARSQVFESSLGAKPKRSIVLLGNAGMGKSTLIKKLCVDWSDGL
LPQFDFVFLLDGKALTLPPEPTYSLRSLLLHLSCPHPRDVFNQVLSVPERVLVIFDGFEV
VRDLEGLLQFPADDSKGENYSVRQLFSGLLQRKLLPGCSLLLSARPRGTVSGLLKRADSL
LELSGFSPPDIERYLGQYFSGQSLEAPALTRLHSQPYLLSMCWNPALCHMVCLLLEHWDV
SDPLPSTLTGLCYSVLLLKMRRHTRKHTHCQTLPQTQTQAHTHTLKHSQKHTLKHTRNWT
RTHIRTRSHTQSQREEGEKEREEKREEEREREEGEKERQMKREEGEKERQEKREEEVRER
EEEEEEREEKREEEERERVEGEEEKEKEREEENRCVLSELSGLAWQGVKGHSSLLTLTLD
NTVCVKLRLFGLRTGLVHSHWLRGEQGRDGDGGGVSSDNILSWAHPFLQSFLGGAHLSVS
SCVSDRALLAQILPQPRGRRRPQGECLDLAQRFAVGLLFRNNAELRDLATLDTGAMKVVA
AKRAAVISHLENLHHGDLSPARLLEACHCVYETGDIRLVRHLVRNLPEVLSFQGVPLCPA
DAFVVWNLLDQCRTLRRRFCLGLEDTGLRMTGLKLLTGLNNIHSYRACIADTITLWEELE
QSGEEELLKAVVSKLTLNPFRATQVSHVQHLSTLVNIHTSRRLSESQSDGVLGEGLPAVR
DLHKLEFELGPVNGPLALPKLLELLPALHSLHHLDLENSKLGDSGAEGLAGAVLSLSSLQ
IINLSQNCIVDQGIESLAPALSTLPSLHCLSLYSNVISDGGAESLAAVLPQMTSLSDLDV
KYNSFTALGAQSLASSLRDCPWIKSLGMWNVCIPYGVLERLQQQDPRIQLL
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgcatggatcatatagtggatcatatggtggaagctgttgcgttttaaccgaggggatg
gagactctcgatgcccgccagacaggtgccaggatgcaggatatggacatcatggatctg
cacccctcccttacacctgaggttgaagactttctgccagaattagacctggatggcttt
ctggaacacgaggattttccttttgacttcaatgatgcgctgtttgacctggactttact
gtggacatacagactggtgaggttgccatgccgacagctgtggccgagccaggcgaccag
aaacagaactgcgagacacagagagagcttggtgacggacagaggaagagagagacagag
cttggtgacggacagaggaagaggggatcgacagaggctggtgacggacagaggaagagg
agatcgacagagcctggtgacagacagaggaagagagcgaagaggagagcggcagaggct
ggtgacggacagaggaagaggagagcgacagagcctggtgacggacagaggaagagagag
actcagacagactctcccatcagaggttgtgctggttctcctcccctctcggccgtgact
ctctctcctcctcctcccagatttgtccagatcgctccttctctcctttacattcctggg
tttgggactgctactttcgtctcttcgtgtagcaatggctcagagctgcagctggttcaa
gcccctgttttcggcttctcaagacctcccacctacatactgatgtcttctccctcgctg
tctcctagaaccctcgacgtcctacctctctctccagttgacggtgaggtagctccagac
tcgatgtgttcgtatcctcctgggtctctgtctgactgtgccagccaagccctgtctccc
ccctctgcctcccccctctcccccaggacagaggagtacattcaccaagccaaggctcac
ctgaggggaatgtgccaggagatggaggcgggccttagcctggcgtcccactatgttgac
gtgcgattggtccagaggcagatcctgattggctcagggaagaacaccagcaagtgcctg
gagaaagatttggtcgttatcggagacgcggagaggaggcggggctcgttggccaggagt
caggtgtttgagagctccctcggggcgaaacccaaacgttccatcgtgttgctaggcaac
gccggcatgggcaaaagcacgctcatcaagaagctctgcgttgattggtccgacggcctc
ctgcctcagtttgactttgtgttcttactggacggtaaggctctgaccctcccccctgag
ccgacctatagccttcggtccctcctcctacacctctcctgcccccacccacgggatgtc
ttcaatcaggtcctctctgtcccggagcgtgtgctggtgatattcgatggcttcgaggtg
gtgcgtgacttggaggggctgcttcagtttccagcggatgacagtaaaggggagaactac
agcgttagacagctgttctcaggtctgctccagaggaagctgctaccaggctgctctctg
ctcctctctgcccgaccacgaggcaccgtcagtgggctgctgaaacgggctgacagcctc
ctggaactctctggcttctcccctccggacatcgagagatacctgggacaatacttctct
ggacagtccctagaggccccagccctcaccaggctccatagccagccgtaccttctgtct
atgtgttggaacccagctctgtgtcacatggtctgtctgcttctagaacactgggatgtt
tcggacccactcccctccacgctgacgggactgtgttacagtgtgttgctactaaagatg
agacgacacacccggaaacacacacactgtcaaaccctaccccaaactcaaacccaggca
cacactcacacccttaaacacagtcaaaaacacaccctgaaacacacacgcaactggaca
cgaacacacatccgcactcgctctcacactcaatcccaaagggaggagggagagaaagag
agagaggagaagagggaggaagagagagagagggaggagggagagaaagagagacagatg
aagagggaggagggagagaaagagagacaggagaagagggaggaggaagtgagagagagg
gaggaggaagaggaagagagagaggagaagagggaggaagaagagagagagagggtggag
ggagaggaagagaaagagaaagagagagaggaagagaacaggtgtgttctgtcagagttg
agcggtctggcttggcagggggttaaaggtcattcatctctcctgaccctgactctggac
aataccgtctgtgtcaagctgcggttgtttggcctgaggactggacttgtccattctcac
tggctgaggggggagcagggcagagatggtgacggtggcggcgtgagttccgacaacatc
ctgtcctgggcccaccctttcctgcaaagcttcctgggcggggcccacctgtccgtctcc
agctgtgtgtctgaccgcgctctgctggcccagatactaccacagcccagggggaggcga
cggcctcagggagagtgtctggaccttgctcagagattcgctgtcgggctgcttttccgg
aacaatgcggaactccgggatctggccaccctggataccggcgccatgaaagtggtggcg
gccaagcgagccgctgtgatatcacacctggagaaccttcaccatggcgacctgagcccc
gctcggctcctggaggcgtgtcactgcgtttacgagacaggcgacatccgcttggtcagg
cacctggtacggaaccttcccgaggttctgtcgttccaaggggttccactgtgccccgcc
gacgccttcgtagtgtggaaccttttggaccagtgtagaacgctgaggaggaggttctgt
ctggggctggaggacacaggactgaggatgacaggattaaaactactaacgggtctcaac
aacatacactcatacagggcgtgtatcgctgacaccatcactctgtgggaggagctagag
cagagtggggaggaggagcttctaaaagcggttgtgtccaagttgacccttaaccctttc
agagccacacaggtgtcccacgtccaacacctgtccacactggtcaacatacacacaagc
aggagactgtcagagagccaatcagatggtgtcctgggggagggtctaccggcagtcaga
gatctccacaagctggagtttgagttggggccagtgaatggtcctctggcgctccctaaa
ctcctggagctgctgccagccctgcacagtctacatcacctggatctggagaacagtaaa
ctgggggacagtggggctgaggggctggctggagctgtgctgtctctctcctctctgcag
attatcaatctgtcccagaactgtatagtagaccagggaatagagagtctggctcctgct
ctgtctaccctcccctcgctgcactgtctcagtctgtacagtaatgtgatatctgacggg
ggtgctgagagtctggctgctgttttacctcagatgacatcactcagtgacctggatgtc
aagtacaacagtttcacggccctaggggctcagagtctggcttccagtctgagggactgt
ccatggatcaagagtctggggatgtggaatgtgtgtattccctacggagtgttagagaga
ctgcaacaacaggacccacggatacagctgctctag
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