Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423685
Help
Entry
139423685 CDS
T10872
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
139423685
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
139423685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
SPK
Motif
Other DBs
NCBI-GeneID:
139423685
NCBI-ProteinID:
XP_071031396
LinkDB
All DBs
Position
13:complement(8343725..8349812)
Genome browser
AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTCINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccatgaagctgtgtgttccaggtgataggctatgcagcacagaagactgtatg
cccggtactggggtgtacctacgacacggctacatctactcctcgctagcaggctatgta
ctcaggaagaacgaaggagaggagctaccagtcatctcggtggtgagagaaaccgaggct
cagctactaccagatgtaggagccatagtgacctgtaaggtgacctgtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacgccactgaaggaccgttttagagga
accatccggaaagaagatgtacgagcaacagaaaaagacagggtggagacgtataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagcagagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtgcctatcagctggtgtgagatgcagtgcccacggacacacgccaaagag
ttccgcaaggtggccagggtgcaacctgagtacctgcaggcctga
DBGET
integrated database retrieval system
