Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423714
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Entry
139423714 CDS
T10872
Name
(RefSeq) MHC class II regulatory factor RFX1-like
KO
K09173
regulatory factor X 1/2/3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139423714
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Other basic domains
RF-X
139423714
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Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
139423714
NCBI-ProteinID:
XP_071031427
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Position
13:4391541..4424250
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AA seq
780 aa
AA seq
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MATPGYTEELQPAPQPNAVTIATQSATPSRSTPTQFNQSVSIVSTAGQDKLPAQATPTKA
QKTVVLAAPSQTPFVTAEIQSSAVQQSNGQSSTPQYIVVTVTDGSLHSSDSVSDSSPPVV
VVQTGVSTQVVQQTTQQVQQQVYSSQYVEGEDSSYTTSTIRSGSYPYSDSPLYSQTPPSS
SSSYYESTPTSGSQVTNSVTSQSVSVTAATGGGGSGYVIQGGYVLGGGDYSSHNTRAAPA
TVQWLLDNYEGAEGVSLPRCTLYCHYLLHCQDHKLEPVNAASFGKLIRSVFMGLRTRRLG
TRGNSKYHYYGLRIKATSSLLRLIDDHQHLALRQQPFSQKNRVKPVLKVEGMSNGMSLGA
GQQQGAGLSDISAQVQQYQQFLDASRALPEFPELDLQDRPLPDGIVPEHIAAFQQLYREH
CEAILDVMVNLQFTLVETLWKTFWRFSESIDADTLGVHGESEERLPKWYLVVLCKYQPVV
HWTRDCDNTLYQTLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTSAMMNIPEEMVRMK
VMCAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFTNVQEQASWVCGCE
DGVIQRLEQDFKQTLQQHNSLEQWAAWLDGVVSQVLKPYPHSPAAFPQAAKLFLLRWSFY
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLVEHRVAQAKGETPIAVMGEFASVGRSL
NCQDPDKDEEEDEEESDEEGVEMTVPSNSAGLGEGEVSLEPPVKLARTDPRGLFNTTHTE
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgggctacacagaagagctccagccggccccccagcccaacgctgtcacc
atagcaacgcaatcagccacgccctcccgctccacgccaacccagttcaaccagtcagtg
tccatcgtctccacagccggacaggacaaacttcctgctcaagccacgcccaccaaggcc
cagaagacagtggttcttgccgctccttctcagactccgtttgttaccgcggagatccag
agttctgccgttcagcagagtaacggacagagttccacaccgcagtacatcgtagtgacc
gttacagatggctctctccattctagtgacagtgtatcagactccagtcctccagtagta
gtggttcagacaggggtctccacccaggtagtacagcagaccacccaacaggtgcagcag
caggtttactccagtcagtatgtggagggagaggactcttcttacaccacctctaccatt
cgttctggcagctacccgtactccgactcccccctctactcccagacccctccctcttcc
tcctcttcctactacgagtccacgcccacctcggggtcacaggtcactaactccgtgact
tcacagtcggtctccgtcaccgcggcaacgggaggaggtgggagtggttacgtcatccag
ggcggatacgtattgggaggtggggactactccagtcacaacaccagagcagcccccgcc
acagtacagtggctgctggataactacgagggtgcagagggggtcagtctgcctcgctgt
accctctactgccactacctcttacactgtcaggatcacaagctagaacctgtcaacgct
gcctccttcggaaaactcatcagatctgtcttcatggggctgaggaccagacgcctgggc
acacgagggaactccaagtaccactactatggtcttcgtatcaaggccacctcctctctg
ctccgtctgatagacgaccaccagcacctcgccttgagacagcagcccttctctcagaaa
aacagggtaaagccggttctgaaggtggagggcatgtccaatgggatgtctctgggtgcg
gggcagcagcagggggcggggctcagtgacatctcagctcaagtgcaacaataccagcag
ttcctggacgcgtcgcgggcgctgcctgagttcccagagttggatctgcaggacagacct
cttcctgatggcatcgttccagaacacatcgcagccttccaacagctctacagggaacac
tgtgaggccattctggatgtgatggtgaacctgcagttcactctggtggagacgctgtgg
aaaaccttctggaggttcagcgagagcatcgacgcagacacactcggcgttcatggtgag
tcagaggagcgtctacctaagtggtacctggtggtgctgtgtaagtaccagccagttgtt
cactggaccagagactgtgacaacacactgtaccagaccctggtggagatcctcatccct
gacgtattacgacccatccccagtgccttaactcaagctatccgtaactttgccaagagt
ctagagagctggctgacaagcgccatgatgaacataccagaggagatggtccgcatgaag
gtgatgtgtgcgggggcgtttgcccagacgctgcgtcgctacaccagtctaaaccacctg
gcccaggcagccagggccgtcctccagaacaccgcccagatcaatcagatgctgagtgac
ctcaacagagttgacttcactaacgtgcaggaacaggcgtcgtgggtgtgtggttgtgag
gatggtgtgatccagaggttggagcaggacttcaagcagacgttacaacaacataactct
ctggagcagtgggctgcctggctggacggcgtggtctcccaggtcctaaagccctaccca
cacagcccagcagccttccctcaggctgccaagctcttcctgctgcggtggagcttctac
agttccatggtgattagagacctgactctgcgtagtgctgccagcttcggatccttccac
ctgatcagactgctgtatgatgagtacatgtactacctggtagaacacagagtggcccag
gctaaaggagagacacccatcgctgtcatgggagagtttgccagtgtgggcaggagtctg
aactgtcaggaccctgataaagatgaggaagaggatgaggaggagagtgatgaagagggg
gtagagatgaccgtgccgtctaactccgctggtctgggagagggggaggtgtcactggag
ccgcccgtcaagctagccaggactgacccccggggactgttcaataccacacacacagag
tga
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