Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423779
Help
Entry
139423779 CDS
T10872
Name
(RefSeq) LIM domain-containing protein 1-like
KO
K16682
LIM domain-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139423779
03036 Chromosome and associated proteins [BR:
ocla03036
]
139423779
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139423779
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
139423779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
139423779
NCBI-ProteinID:
XP_071031515
LinkDB
All DBs
Position
2:complement(19976651..20007569)
Genome browser
AA seq
654 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKRDAGNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLAVRMNGGHNRTADSTFYTKDRPPINSYRQAGEAAAKPPILSGPLPGTASGA
SQYAPYDALKHHSPSQQPYSYGNNYDNKERFEPHSYHHALSPTSPGNAPTHASGHPASPS
VTWASYSSSPGGSSGLMCSPPQQPPHHSPSPSFSDSLHQSKAATLLVRQRPPMVAGAAAD
WMRSLGNPELIAPLPLSAFTGGADLYQHLSPQPAPVTPPTGPYSAAPYMAPRPTANQGNL
RQNGLSQSPVALTPSPTPAQGAVPTPPVHPSETAQPKATTGAYFPASASPSGTSVSRSFG
QGQGIGQAQGRQVAMGVDVPSGLDSQLSSGGEACQLQHQPQSLKLPCQTLHVQPEQGPSA
AEIKLEALTKRLEKEMDAQPKADYFGSCVKCNKAVYGATEACQAMGNLYHDVCFTCSACS
RRLRGKAFYYVGGKVFCEEDFLYSGFQQSADKCNACGHLIMDMILQALGKSYHPGCFRCV
ICNDSLDGVPFTVDTENKIYCVKDYHRVLAPKCAACNQPILPSEGSDETIRVVSMDKDYH
VECYHCEDCQMELNDEEGHRCYPLDGHLLCHTCHLKHIEPGCASPTAASYQHQF
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaaatttttagaagacctcaatatg
tatgaggcatctagggacgggctgttccgaatgaagagggatgcagggaacaactccgac
tttgaagaaaccaggagggtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaatagccaaaaacaatttggcagtgagaatgaacgggggtcacaacagaacg
gcagacagcacgttttacaccaaagacaggccgcctatcaatagctacagacaggcagga
gaagctgcggccaagcctcccatactctctggccctttgccaggcaccgccagtggcgcg
agtcagtacgcgccctatgacgctctgaaacaccattcacccagtcaacagccatacagc
tacggaaacaattacgataacaaggagcgttttgagccgcattcttaccaccacgccttg
agtcccaccagcccagggaatgcacccacacatgcttctggtcaccctgccagtccctct
gtcacttgggcctcttactcttccagccctggtggatcatcagggcttatgtgcagccca
cctcagcagcccccacaccactcaccatctccctccttctccgacagcctgcaccagagc
aaggctgccactctactagtgcggcagagaccccccatggtggctggggctgcagcagac
tggatgcggagcttggggaacccagagctgattgcaccgctccctctgagtgccttcact
ggcggagctgacctgtaccagcatctgtctccacaacctgcccctgttacaccgccaaca
ggcccttactcagcagcaccctacatggccccaagaccaaccgccaaccagggaaatcta
cgccagaacgggctctctcagagtcctgtggctcttacccccagccccacccctgctcaa
ggggctgtcccaaccccacctgtacacccatctgagacagcccagcccaaagccactact
ggagcttacttccctgcctctgcctctccctctggaaccagtgtctctagaagctttggc
cagggtcaaggtataggccaggcccagggcaggcaagtggccatgggggtggatgtgccc
tctggcctagacagccagctgtcctctggtggtgaggcttgccagctccaacaccagccc
cagtctctcaaactgccctgccagactctccatgtccagccggagcaggggccgtctgcc
gccgagatcaaattagaagccctgaccaagcgtctggagaaggagatggacgcccagcca
aaggcagactacttcgggagctgtgtgaagtgtaacaaggcggtgtacggagccactgag
gcctgccaggctatgggaaacctctatcatgatgtctgcttcacctgcagcgcctgcagc
agaaggctacgggggaaagcattttactacgtcggtgggaaggtgttctgtgaagaggac
tttctgtattctggattccagcagtctgcagacaagtgtaacgcatgcggacatctgatc
atggatatgatcctgcaggcccttgggaagtcttaccaccctggctgtttccgttgtgtt
atctgtaacgacagtctggacggagtgcccttcactgtggacacagagaacaagatttac
tgtgtcaaagactaccacagggtcttggcccccaaatgtgcagcatgtaaccagcccatt
ctgccttcagagggctctgatgaaaccatccgagtggtatccatggataaagactaccac
gtggagtgctatcactgtgaagactgtcagatggagctgaacgacgaggaggggcaccgc
tgctacccgctggacggccacctcctctgccacacctgccacctgaagcacatcgagccg
ggctgcgcctcgcccaccgctgcctcctaccagcaccagttctag
DBGET
integrated database retrieval system
