Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423813
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Entry
139423813 CDS
T10872
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139423813
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Others
Others
139423813
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
PSII_BNR
Motif
Other DBs
NCBI-GeneID:
139423813
NCBI-ProteinID:
XP_071031549
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Position
13:complement(19428716..19588577)
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AA seq
1288 aa
AA seq
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MERGVRLCPIWHTSVFWFLLLIMLSFFLAAKSEITCRSCQPGDKGRIKELLLKTDTREFA
TGHGGEVIGNGDGTTASRSLNSASVETQQLDCAAGSDECIQGKYIYSRRKRNTDILLRPK
NALLDGGMQYGGGKQRKFTPRGEYKVSNLKMNRHVGNTDVGKARADLIPGVSHKHRVRRD
SPRANIGDVKVKSSGSPQRRETLPLSYSREGITSRTGRSRVTRSELRWSNEDRRAASSRQ
DELKLTSSTFALTGDSAHNQAMVHWSGQNSSVILMLTKLFDFNLNSVTESSLWRSTDYGT
TYQKLNEKVGAKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEGATYQKYRLSFYIL
SLLFHPEQEDWILAYSHDQKLYSSVEFGRRWQLVHERVAPNRFYWSKTGLDKEPGLIHLE
TIISEGQALYVTCKLQNCTEANKGKPFPGYIDPNSLVVQDEYVFVQVSTGGRPIYYVSAK
REVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSETGGVFYTLALENV
VSSMGHEGNVMIDLYEVAGIKGMFLANKKTDNVVKTYITYNRGRDWRLLQAPTADLRGNS
IRCELPYCSLHLHLHVSANPYTSGNIESKDSAPGIIVASGSIGAELTTSNVSMFITSDAG
NTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWMSFDEGREWNKYSFTMSPLFVDGL
LGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEGDYQTWHLHNRGEPCIMGVK
RIYRKLKPIARCVMGKTYSVTMTSAPCDCTEADFECDYGYDRRSDGKCTPAFWFLPSSMS
RSCTTGTTFINSTGYRKVVSNNCTAGVIAEYTARRQHCPTQAPKGLHLVTSEGKLTATLG
TNVTFLVFLEEGDGARTSIMVDFGDGHTLTYSNVSSIENGVKHVYKAVGIYRVTATGENR
LGSESVVLYLHVTCQLEYIHLSAPFVAVKSKEVNLTAVLWPSQVGTVTYIWWFGNNTEPI
ITLEGSVACTFSREGVNTVTVQVSAGNAILQDRKAIAVHEYFRSHLLAFSSNLDDHNPDV
AEWRLDVSRVIKNSMVKATGVTPERLLVSVLPGLPTAAEFFLLPDKELTEGKPDKNSAHL
DQLTEIILSALNQNLVQFTLRPGVQVTVYAAHLSAAPLVDMSENHSGSAMLMLLSVVVLG
LAIFVVYKFKRKIPGLNVYAQMQNEKEQEMIPSPVSPTESTLVSPNTPRELVTSPELMDT
ELNTRPIGCIKSHAHVKFSTEIPTYINI
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggggtcagattatgccctatttggcacaccagcgttttctggtttctgctt
ttgataatgctatctttctttttagccgctaaatcagagataacttgcagatcatgtcag
ccgggagataaggggcgtattaaggaattactgcttaaaactgacacacgagaattcgca
acaggccacggaggggaagttattggaaatggagacgggacaactgcttcacggagttta
aattctgcaagtgtcgaaactcaacagcttgattgcgcagctggatccgatgaatgcatc
caggggaaatacatatactcaaggcgaaaacggaatactgacatactgctccgtcccaag
aacgcactactcgatggaggaatgcaatacggtggtggtaaacagagaaaattcaccccg
cgcggtgagtacaaagtttccaacctgaaaatgaaccgtcatgtaggtaatacagatgtc
gggaaggctcgcgcagatttaattcccggcgtctcacacaagcaccgagttcgtagggac
agcccgagagctaatattggggatgttaaagtgaagtcctccggctcaccccagagaagg
gagacactgcctctgagttactcgcgagagggcatcacctcacggactgggcgcagcaga
gtgacacggtccgaattgcgatggagcaacgaggacagaagagcggccagttcgaggcag
gacgaactcaaactcaccagttcaaccttcgcattgaccggagattccgctcacaaccaa
gccatggtgcactggtctgggcaaaatagcagtgtgattctcatgctgacaaagctgttt
gacttcaacctgaacagtgtcacggagagctcgttgtggaggtcaaccgactacggaacc
acttaccagaagctcaatgagaaagtgggggcgaaaacaatcctcagctacttgtacgtc
agtcccaacaacaagagaaagatcatgcttctgactgacccggaggtggaaagcagcctg
ctgatcagctccgatgagggagccacctatcagaagtaccgcctcagcttctacatcctc
agccttctcttccaccccgagcaggaggactggatccttgcctacagccatgaccagaag
ctgtacagctcggtggagtttggaaggaggtggcaacttgtccatgagagggtggccccc
aatcgattctactggtcgaaaacgggtttagacaaagaaccgggcttaattcacctggaa
accatcatctctgaaggacaggcgctgtacgtcacctgcaagctgcagaactgcaccgag
gccaataagggcaagccgttccctggctacattgaccccaattcccttgtggtgcaagac
gagtatgtgtttgtccaggtgtcaactggtgggcgtcccatctactatgtgtcagccaag
cgggaagtcttcacacccatgaagctacccaagtacaccttgcctaaggatctgcatgtg
atcagtacggatgagaaccgggtggttgcggccgtgcaggagtggaaccagaacgacacc
tacaacctgtacgtgtcagagactggaggggtcttctacaccctggccctggagaacgtg
gtcagcagcatggggcacgagggcaacgtcatgatagacctgtatgaggtggcgggaata
aaagggatgttcctcgccaacaagaagacggacaacgtggtgaagacttacatcacctac
aacagagggagagactggaggctcctgcaggctcccactgctgacctgaggggaaacagc
atccgctgtgaactaccatactgttccctacacctccacctgcatgtgtcggccaacccc
tacacgtcggggaatatcgagagcaaggactctgccccggggatcattgtggcctcaggc
tccatcggagcggagttgaccaccagcaacgtgagcatgttcatcacctcggacgccggc
aacacgtggagacagatctttgatgaggagtacagtgttctctacctggaccaaggaggg
gccctggtggctataagacacactccactccccatccgacacctatggatgagtttcgac
gaggggagagagtggaataaatacagtttcaccatgtcgcccctgtttgtggacgggttg
ctaggggagccgggggaggagactctcattatgacgatctttggccacgtcagtcaccgg
tccgagtggcagctggtcaagattgacttcaggtccatcttcaaccggagatgtacagag
ggggattaccagacatggcacctacacaaccggggcgaaccgtgcatcatgggagtgaaa
agaatctacaggaagttgaagcccatagccaggtgcgttatgggtaagacgtactcggtc
acgatgacctcggcgccctgcgactgcacagaggccgactttgagtgtgactatggctac
gataggcggagtgacggcaagtgcacccctgccttttggttcctcccatcgtccatgtct
agaagctgcaccacagggactactttcatcaacagcactggctacaggaaggttgtgtcc
aataactgcacagcgggagtgatagcagagtacacggccaggaggcagcactgtcctacc
caggcccccaaaggcctgcacctcgtcaccagtgaaggaaagctgacagctacgctgggc
accaatgtcaccttcctggtgtttcttgaagagggcgacggagccaggacgagcatcatg
gtggacttcggggacggtcacactctgacctactccaacgtgagctccatagagaatggg
gtcaagcacgtctacaaggctgtcgggatctaccgtgtgaccgctacaggagagaacagg
ctggggtcggagagcgtggtgctgtacctccacgtcacatgtcagctggagtatatccat
ctctccgctccctttgtggcggtgaagagtaaggaagtcaacctcactgctgtgctgtgg
ccgagccaagtgggaacagtcacctacatctggtggttcggaaataacactgagccgata
atcaccctggaagggagcgtggcgtgcacgttctcccgggaaggcgtcaacactgtcacc
gtgcaggtgtccgctgggaacgccatcctgcaggaccggaaagccatcgctgtccacgaa
tatttcaggtcacatctactagccttctcatctaacctggatgaccacaaccccgacgtg
gccgaatggagactagacgtcagcagagtcatcaagaactccatggtcaaagccacaggg
gtgacaccggaacggctccttgtcagtgtcctaccagggttgcccacggcagcagagttt
ttcctcctgccagacaaagagttaacggagggaaagccggataagaactcagctcattta
gaccagctcactgaaatcatacttagcgccctcaaccaaaacctggtccagttcaccctt
cggcctggggtccaggtcacagtatatgctgcacatttgtcagcagcgcccctagtggac
atgagtgagaaccacagcggctcggccatgctgatgctgctgtcggttgtggttctgggt
ttggcgatatttgtcgtctacaaattcaaaaggaagatcccaggcctcaacgtctatgcg
cagatgcagaacgaaaaagaacaagaaatgatcccgagtccagtaagtccgacggaaagc
accctggtgtccccgaacactccgagggagctggtgacttctccggagcttatggacaca
gagttgaacacacggcccatcggatgcatcaaatctcacgcacatgtcaagttctcaacg
gaaatccccacgtacatcaacatttaa
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