Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423816
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Entry
139423816 CDS
T10872
Name
(RefSeq) homeobox protein MSH-C-like isoform X1
KO
K09341
homeobox protein MSX
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139423816
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: NKL
139423816
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
HTH_NDX
DUF7645
Motif
Other DBs
NCBI-GeneID:
139423816
NCBI-ProteinID:
XP_071031552
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All DBs
Position
13:19808771..19810363
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AA seq
283 aa
AA seq
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MAPYPFEMNPVGLSGSPSREIKLHQKEESDTECEELQPKDMTTDKGYKSKTSSLPFSVES
LISKKTTCRTYSSSPSSDSGLVQPKPVAAAVQITEQFSPRTFYVERKVSPESTQSVSDCQ
NDDNQDFCEKDQSTWFQTTSFSTPPRSLSPPPCPLRKHKNNRKPRTPFTTSQLLALERKF
RQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKYKLASKPMLPAFAL
PFPLGAHMGSPSLYGHSNAYPRPTLPVPGLFGGPVTYGMYYLS
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggccccgtacccctttgagatgaatcccgttggcctatcggggtctccgtcccgcgag
attaaactccaccagaaagaagagtcggatacggagtgtgaggagcttcaacccaaagat
atgacaactgacaaaggatacaaaagtaagacgagcagtcttccatttagcgtcgaatca
ttgatttccaagaaaacaacctgcaggacttattcttcttctccctcctcggattcgggt
ctcgttcaaccgaagcctgtggcggcggcggtgcagatcacggaacagttttctccaagg
actttttacgtggagaggaaagtttccccggaaagcacacagagcgtgtcggactgtcag
aatgacgacaatcaagatttttgtgagaaagaccagagcacttggttccagactacatct
ttctcgactccccctcgaagcttaagtccacctccatgccctttaaggaaacataaaaac
aaccgaaaacctcgaacgcccttcactacctcccagctgctcgctctggaaaggaaattc
cgacaaaagcagtatctctccattgcggagcgtgccgaattctccaactccctcaatttg
accgagacccaggtcaaaatctggttccaaaacagaagggctaaagccaagagacttcag
gaggccgagttggaaaagtacaaactggcgtcgaaaccaatgctacctgcctttgctctg
ccattccccctgggagcgcacatgggctctccatctctctacggacattctaacgcctac
cccaggcccacgttacctgttccgggactcttcggtggacctgtcacctatggaatgtat
tatttgtcttga
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