Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424058
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Entry
139424058 CDS
T10872
Name
(RefSeq) MHC class II regulatory factor RFX1a
KO
K09173
regulatory factor X 1/2/3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139424058
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Other basic domains
RF-X
139424058
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Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
DUF3176
Motif
Other DBs
NCBI-GeneID:
139424058
NCBI-ProteinID:
XP_071031850
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All DBs
Position
13:complement(55544865..55570456)
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AA seq
913 aa
AA seq
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MATTGYVGELQPVTTQPQGAASGSVTVAGQSSASTAPHTVVAPTQQFLAQLQTTVGAPAA
TAGHTTPPAQATPTAAQKTAVVQVAPTQAPPPQTQYVTAEIQGSSSQANNAQNAPQYIVV
TVTEGSLHSSDSVSDSSPPPAVVQQTGVPTQVVQQVQAAQQRSVVQATSQITAKTEQGIT
TQLSVTNLQPVHLTQEVQQQLQQVPVQHVYTNQVQYVEGGDNNYTTSTIRSGSFTYTDTP
LYTQTTAAPYYEAPPTSGSQVPTTGTPLTVSVTTGSTGGVSMYVAGTGQIVANPASASAG
GATVVATGGTANGTGEGAGANGSGGSYVIQGGYMLSGNSQGGYSTHNARSSPATVSTTEG
EEGSGVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS
VFMGLRTRRLGTRGNSKYHYYGLRIKACSSLIRLMEDQQHLAMRQQPFSQKQRLKPVQKV
EGMTNGMAAGSGQQQQQQGAGLSDISAQVQQYQQFLDASRTLPEFPDLDLQGKALPEGIE
LEHIKSFQLLYREHCEAILDVTINLQFTLVETLWKTFWRFEESQSGDTGTLAVHDESEKR
LPKDCLVILCKYDPVLRWSRDCDNTLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESW
LTNAMMNIPEEMVRIKVTSASSFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRV
DFANVQEQASWVCRCEDRVVQQLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQASAA
FPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGET
PIAVMGEFASLGRSLNPLDPDKEEEEEEEEESDDECQELSLPSDGAGLGEESLEPPTKLA
RTDQRVLFTTGQD
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacaggctacgttggggagttgcagcccgtgacgacccagccccaaggggca
gcgagtgggagtgtgacggtggctggacagtcctcagcatccactgccccacacaccgtg
gtagctcctacgcagcagttcctggctcagcttcagaccacagtgggggctcctgcagcc
acagcaggacacaccacaccccctgcacaagccactcccacagcggcacagaaaacagca
gttgtccaggtggcgcccacacaggctcctcccccccagacccagtatgtgacggctgag
atccagggttcctcatcacaggccaacaacgcccagaacgccccccagtacatcgtagtc
accgtcacagagggctctctccattcaagtgactctgtgtctgactcgagccctcctcca
gctgtggtacagcagactggggttcccacacaggtggtgcagcaggtgcaagcagcacag
cagaggtcagtggtgcaggcaacgtcccagatcacagccaagactgaacagggtatcacc
acccagctgagtgtcaccaacctgcagcctgtccacctcactcaggaggtgcagcagcag
ctccagcaggtgccagtgcagcatgtgtacaccaatcaggtgcagtatgttgaaggggga
gacaacaactacaccaccagcacaattcgttcaggcagcttcacctacacagacacccct
ctgtacactcagaccaccgccgccccttactacgaagcccctcccacctctggctcacag
gtccccaccaccggcacacccctgaccgtctccgtgacaacgggctccaccggtggtgtg
tctatgtacgtggctggcacaggccagattgtggccaatccggcgtccgcctctgcgggt
ggggcaacggtggtggcgacagggggaacagccaatgggactggggaaggggcgggggct
aatggaagcgggggcagctatgtgatccagggggggtacatgctgagtggcaacagtcag
gggggctactccacccacaatgcccgctcctctcctgccaccgtcagtacaacagagggc
gaggagggtagtggcgtaccgtcggcagacaaaaaggtgcagtggctgctagataactat
gagacagctgaaggggtcagtctgcctcgctccaccctctactgccactacctgctgcac
tgccaggagcagaagctggagcccgtcaacgctgcctcctttgggaagctgatcagatcc
gtgttcatggggctacgcacgcgccgcctgggcacccgggggaactccaagtaccactat
tacggcctgaggatcaaggcctgctcctctctgatcagactgatggaggaccagcagcat
ctggccatgagacagcagcccttctctcagaaacagaggttgaagccggtgcagaaggtg
gaggggatgaccaatggcatggcggcaggctcgggccaacagcagcagcagcagggggcg
gggctctctgacatcagcgcccaagtgcagcagtaccagcagttcctggacgcgtctcgg
accctcccagagttccctgaccttgacctgcaggggaaggccctaccggagggcatagaa
ctggagcacatcaagagcttccagctgctgtatcgggaacactgtgaggctattctggac
gtgacgatcaacctgcagttcaccctggtggagaccctgtggaagaccttctggaggttt
gaagagagccagagtggagacactggcacactggctgtacatgatgagtctgagaagcgc
ctgcctaaggactgtctagtgatcctgtgtaagtacgaccctgtgctccgctggagccgc
gactgtgacaacaccctgtaccagggcctggtggagatcctcatccccgatgtactgcgg
cccatccccagtgccttaactcaagccatccgcaactttgccaagagtctggagagttgg
ttgaccaacgctatgatgaacatcccagaagagatggtccgcattaaggtaacgtcagcc
agttcatttgcccagacgctgcgcaggtacacctctctgaaccacttggcccaggcagcc
agggctgtgctacagaacacagctcagataaaccagatgctcagcgacctcaaccgcgtg
gacttcgccaatgttcaggagcaggcgtcgtgggtgtgtcgctgtgaggaccgtgtggtg
cagcagttggagcaggacttcaagctgaccctgcagcagcagaactctctggagcagtgg
gctgcctggctggacggggtggtctcccaggtcctaaagccctaccaggccagcgccgcc
ttccccaaagcagccaagctcttcctgctcaagtggtccttctacagttccatggtgatt
agagacctgactctgcgtagtgctgccagcttcggatccttccacctgatcagactgctg
tatgatgagtacatgtactacctgatagaacacagagtggcccaggctaaaggagagaca
cccatcgctgtcatgggagagttcgccagtcttggcaggagtttgaacccactggatcca
gacaaagaagaggaagaggaggaggaagaggagagcgatgacgagtgtcaggagctgtct
ctgccctctgacggggcggggctgggggaggagtctctggagccgcctaccaagctggcc
agaaccgaccagagagtactcttcaccacgggccaggactga
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