Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424231
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Entry
139424231 CDS
T10872
Name
(RefSeq) slit homolog 1 protein-like
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
Laminin_G_1
Laminin_G_2
hEGF
EGF_TEN
LRR_8
EGF_3
EGF_Teneurin
EGF_CA
EGF_DL_JAG
LRR_4
EGF_2
Motif
Other DBs
NCBI-GeneID:
139424231
NCBI-ProteinID:
XP_071032010
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Position
13:9844177..9866902
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AA seq
748 aa
AA seq
DB search
MDILSYNSLRCIPPLALAGLRSLRLLSLHGNDISELLEGIFSDVASLSHLAIGANPLYCD
CHLRWLSDWVKSGYKEPGIARCAGPMGMEGKLLLTTPETKFECLGPVETSVQAKCSPCVS
GPCQNHGVCQSDPVELYTCVCAPGFTGKYCETPVDVCASNPCTNGGTCISDEQTRRFSCS
CLVGFHGSFCEVDVDDCEDHGCENGATCVDGVGNYTCFCPPFYIGLLCEEEEDVCSPGRN
PCQQHSTCSSTTTGPRCVCAPGFVGGDCSVNYDECEDQDCQNGAVCVDQVDGYTCTCPQG
YSGELCEVPPPPPSPCERARCQNSAPCVDRGGTALCQCLPGFEGVRCEKLVSVNFVNRDS
YLQLSDLKNWPQANITLQVSTAEDNGILLYNGDNKPMAVELHEGHVRVSYDPGSQPGHTI
YSAETVNDGRFHTVELVTFDRMVNLSVDGGAPTTLDSLVGVPPLSGEAPLYVGGMPEKMS
YSSLSLFQPLNSSSFHGCIRNLYINHELQDFTQTTMKPGVVPGCQPCRKLFCLHGVCQPD
GAQGPLCHCQPDWGGLHCDQPIGGGLVGGDVAPVTAANPCQGNKCVRGVCVVQDVQSYRC
ECEEGWHATLCNQQGELTALVVPAVPEGPTKPCSVLLCQHGHCQLTEGGATYCLCNTGYT
GDTCDTVESACRGEAVRDFHRVPRGHANCQTTRPFSWVECRGGCQGGGAACCAPLRVRRR
RYTFECDDGSSFTQDVEKAVECGCKECV
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggacatcctgagttacaactctctacgctgcatccctcctctggccctggctggacta
cgctctctcagactactatctcttcatggtaacgacatctctgaactactggaggggatc
ttcagtgatgtggcctccctgtctcacctggcaatcggtgccaaccccctgtactgtgac
tgtcatctgcgctggctgtctgactgggtgaagagtgggtacaaggagcctggcatcgcc
cgctgtgccggaccaatgggcatggagggaaaactgctgctcaccacacctgagactaag
tttgaatgtctgggtccagtggagacgtctgtccaggctaagtgtagtccatgtgtgtct
gggccctgtcagaaccacggtgtgtgtcagtctgaccctgtagaactctacacatgtgtg
tgtgcacccggcttcacgggtaaatactgtgagactccagtggatgtgtgtgccagtaac
ccatgcacaaatggaggaacctgcatcagtgacgaacagacaaggagattcagttgttca
tgcctggtgggtttccatggatcgttctgtgaggtggatgtagatgactgtgaggaccac
ggatgtgagaatggtgcaacctgtgtggacggagtaggcaactacacctgcttctgtcct
cccttctacattgggttgttgtgtgaggaagaggaggatgtgtgctctcctggtagaaac
ccctgtcagcaacactctacctgcagcagcaccactacaggccccaggtgtgtgtgtgcc
ccaggcttcgtggggggtgactgcagtgtgaactatgatgagtgtgaagatcaggactgt
cagaatggagcagtgtgtgtggaccaggtggatggatacacctgcacctgccctcagggg
tacagtggtgagttgtgtgaggtgccccctcctcctccatctccctgtgagcgggctcgc
tgccagaacagcgccccctgtgtggacagaggcggtacagcgctgtgccagtgtctgccg
gggttcgagggtgtgcgttgtgagaagctggtcagtgtgaacttcgtgaatagagattct
tacctacagctgtctgacctgaagaactggcctcaggccaacatcacactgcaggtgtcg
acagcggaggataacggtatcctgctgtataatggagacaacaagccaatggctgtggag
ctccatgagggacatgttcgagtcagctacgaccctggtagtcagcctggacacactatc
tacagtgctgagacggtgaacgacgggcgtttccatacggtagagctggtgacctttgac
aggatggtgaacctgtctgtggacgggggtgcgcccaccactctggacagtctggtaggg
gtcccacctctgtctggagaggcaccgctatacgtggggggtatgccagagaagatgtcc
tactcctctctgagtctcttccagcccctcaactcctccagtttccacggctgcatcagg
aatctgtacatcaaccacgagctgcaggacttcacccagaccactatgaagccgggggtg
gtgccaggatgccagccctgcaggaaactgttctgcctccatggagtgtgccaaccggat
ggtgcccaggggcccctctgccactgccagcctgactggggtgggctacactgcgatcag
ccaatcggagggggccttgttgggggagatgttgccccggtaaccgcggctaacccatgc
caggggaataagtgtgtgaggggtgtgtgtgtggttcaggatgttcagtcgtacaggtgt
gaatgtgaggagggctggcacgccaccttgtgtaatcaacagggggagctaacagcacta
gtagtaccagcagtgccagaaggaccaaccaagccgtgttcagtgctgctctgccaacat
ggccactgtcagctgactgagggaggagcgacctactgtctctgtaacacgggatacacc
ggggacacatgcgacacagttgaatcagcgtgtcgcggcgaggcggtgcgtgacttccac
cgggtgccacgtggccacgccaactgccagacgacgcggcccttctcctgggtggagtgt
cgggggggctgccaggggggcggggcggcgtgctgcgccccactgagggtacggcgccgg
cgctacaccttcgagtgcgacgacggaagttccttcacacaggacgtggagaaagcagtg
gagtgcggctgcaaggagtgtgtgtag
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