Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424280
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Entry
139424280 CDS
T10872
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139424280
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139424280
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139424280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
139424280
NCBI-ProteinID:
XP_071032071
LinkDB
All DBs
Position
13:complement(4023482..4112455)
Genome browser
AA seq
1749 aa
AA seq
DB search
MDRIWSSTPGASPLLLLLLSLLSITVFHEATAAQAANPVDVLRILDLSEDMEGVSLEAGL
CTSREGREETDISFKINKKIQLSVPTKQLFPEGGFPVDFSVLATVRARRGAQVFLLSLYD
PQGTQQLGLEVGRSPVFLYEDQQGLPPPELYPTFRKINLADGKWHRVAYSVEGQSVTLYL
DCEKVESLELQRGLNPEVSTEGVTVFGTRLLDDQVFEGEIQQLLIVADPRAAETYCQDYI
PDCHTPLPYDSLSQETEEETKPRRVKVEEFDEFDYSDLYDDLSVSTVTVRPNITEYEIVE
YEDYDNETDEYEVREYEYEEEFEDRYGLAERERAESWNGQERIEKGEKGEPSYFGASTLI
TGPGGLPGPEGEQGPQGPTGLVGPQGDLGELGPPGRPGLNGADGIPGPPGNILVVQFQAG
GVQLTGPVISAQEAQAQAILQQTKLSMKGPPGPLGLMGRPGPLGNSGPSGLKGVAGEMGP
AGSRGIMGQAGMNGKSGKRGRAGTDGNRGAPGETGGKGDRGFDGLPGLPGHKGHRGEIGK
PGPHGTLGLSGERGSEGQPGPRGQPGDAGSRGLNGPRGHTGPTGQPGIRGVDGIQGSKGN
LGPPGEMGASGQQGNPGLQGFPGSQGLVGLPGLKGPQGKKGLQGLPGNDGPTGHPGREGT
PGEKGLPGPPGVQGPIGYPGSRGVKGADGIRGMKGSKGEKGEDGFPGSKGEMGLKGDGGD
NGVPGSRGEDGPEGPKGQAGPLGEAGAVGIAGEKGKLGVPGLPGYPGQKGPKGSDGFPGS
IGVLGEKGKRGPGGEAGSAGQRGPNGVRGGRGAKGPTGKTGGKGSSGHDGPNGPTGDRGP
QGPQGRNGESGPKGPNGPAGKDGLPGHPGQRGEPGFQGKTGPPGPGGVVGPQGKSGETGS
LGDRGHPGSPGVPGEQGLPGAAGKEGAKGDPGTGGTSGKAGPPGLRGFRGSRGAAGGMGP
AGLKGGEGPVGAAGAIGAGGERGPPGSAGAIGQPGRAGAVGGPGPMGEKGEPGGAGPIGP
SGQDGDQGPLGLPGAAGPAGPPGEDGDKGETGGPGQKGSKGDKGESGPSGPTGGQGPMGQ
SGVPGVDGESGPRGQQGMYGAKGDEGLRGFKGSKGPIGLQGMPGLPGEKGESGHIGLMGR
PGQFGPRGPQGPSGGQGALGRPGGAGQPGVNGEKGEDGESGDPGPVGVSGGNGDIGDQGE
KGDSGLSGAAGPPGARGPPGEDGSKGTSGPIGFPGDSGQPGEAGPNGEDGGPGSKGDGGD
PGKSGPPGASGEPGPSGPPGRRGHLGKEGKQGKAGMKGGKGSPGLEGLLGKTGPVGAQGH
SGKPGPSGLRGIPGPAGEQGLNGPPGVTGPPGPMGPPGLPGLKGDPGRKGDKGHGGLIGL
IGPPGEFGEKGDRGFPGNQGLLGPKGDEGLVGLAGPNGPPGLPGLSGRVGQKGSKGNQGP
IGAIGDTGPAGPPGPPGLPAVGLQSLPVQERGRRRRQHSSFDGAALEDEDEQEGMEGRED
GEEERMQADQAGQEEEKEMEEVFASLSSMRTEVEGLRTPLGTYQYPARTCKELQLLFPKY
TDGEYWIDPNQGCHRDSFKVFCNFTADGETCLYPDMKFQSVKLSSWKGEKPGTWYSQFRK
GKQFSYSGSDGSPVHVVQLVFLKLLSASSRQTFTYHCQNSAAWLHTATFSHQHALRFRGS
SGEELTHQNTHYITALHDGCQSASGQERTVLEFDAPQSDSLPLIDVSVSDFGHNNQKFGF
QLGPVCFNG
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaatatggagctcaacgcccggggcatcgcctctcctcctccttctcctctcc
ctcctctccatcactgtttttcacgaggcgacagcggcacaggcagccaatccggtggac
gtgctgaggatcctggacctatcagaggacatggagggtgtgtctctggaggcggggctc
tgcaccagtagagagggaagagaagagacagacatctccttcaagatcaacaagaagatc
caactcagtgtccctacaaaacagctgttcccagaaggggggttcccagtggacttctct
gtcctggctacggtacgtgcccggcggggtgcccaggtgttcttgctgtccctgtacgac
cctcagggtacccagcagctggggttagaggtcgggaggtcccctgtcttcctgtatgaa
gaccagcaaggcctgcctcctcctgaactatacccgaccttcaggaagatcaacctggct
gacggcaaatggcacagggtagcgtacagtgtggagggtcagtcagtgactctgtatctg
gactgtgagaaggtggagagtctggagctccagagaggtctgaacccagaggtcagcact
gaaggggtcactgtgttcgggacacgactactggatgaccaggtcttcgagggagaaatc
caacaattgttgatcgtagccgaccccagagctgcagagacctactgtcaagactacatt
cccgactgccacacccctttaccctacgacagcctatcacaagagactgaggaggagaca
aagcccaggagagtgaaggtggaggagtttgatgagtttgactacagtgacctttacgat
gacctctctgtctccacggttactgtgagacctaacatcacagagtatgagattgtagag
tacgaagactacgacaacgaaacagatgagtacgaggtcagagagtatgaatacgaggag
gaatttgaagatcgatacggattggccgagagggagagggcggagtcctggaacggacag
gaaagaatagagaaaggagagaaaggagaaccatcctactttggagcaagcaccttaatc
acaggccccgggggtcttccaggaccagagggagaacaaggaccccaggggcccacagga
ctggtaggacctcaaggagacctaggagaactgggtcctccaggccggccgggtctcaac
ggggctgatgggataccaggtcctccagggaacatcctcgttgttcagttccaggcaggt
ggagtccaactaacaggaccagtgatatcagcccaggaggctcaagcccaggccatccta
caacagaccaagttgtctatgaagggaccacctggaccactaggccttatgggacgccct
ggaccgctgggtaactcgggtccgtcggggctgaagggagtagccggggagatgggacca
gcaggttctagaggtattatgggccaagcagggatgaatggaaagtcagggaagaggggt
cgagctgggacagatgggaacaggggtgctccgggtgagaccggtgggaagggtgacagg
ggttttgatggcttgccaggtcttccaggacacaagggacacaggggggagataggaaaa
ccaggcccccacggtactcttgggctgtcaggagagaggggttcagaaggacaaccagga
ccaagaggacagccaggtgatgctggttccagagggttgaacggacccagaggtcacact
ggccctacaggtcagcctggaatccgaggagtggatggaatccaaggttctaagggaaac
ttgggacctccgggagagatgggagcatccgggcagcaaggaaaccctgggttgcagggg
tttcctggttctcagggcctggtaggcttgccaggacttaaggggccccaagggaagaaa
gggttgcagggactacctgggaatgatggacctaccggtcacccagggagagaggggact
ccaggagagaagggactgccgggcccaccaggagtccaggggcctataggatatccagga
tcaagaggagtaaagggagcggacggaattagaggaatgaagggaagcaaaggggagaag
ggtgaggatgggttccccggctctaagggagagatggggctgaaaggtgacgggggtgac
aacggggtcccagggtccaggggagaggatggtcctgaaggacctaaaggacaggctgga
cccctgggggaggctggagccgtgggcatcgctggagaaaagggtaaactgggagttcca
gggttgccggggtatccgggacaaaaaggaccgaagggttcggatggttttcctggatct
attggcgttttgggagagaaggggaagaggggtcccgggggggaagcaggcagtgcagga
cagaggggtcctaacggggtgcgtgggggccggggtgccaagggaccaacggggaagaca
gggggaaagggctcctctggacatgatggacccaatggaccaactggagacagggggcct
caagggccacaaggacggaacggggaatcaggacccaagggaccgaacggtccagcgggg
aaagatggacttccgggtcacccaggtcagagaggagagccgggtttccaaggaaagacg
ggacccccaggtccaggaggtgttgtggggccacagggtaaatcaggtgagaccgggtcg
ttgggagacagaggtcaccccgggtcacctggtgtaccgggagagcagggcttacctggc
gctgccgggaaggagggagctaagggcgacccgggcacaggagggacttctgggaaagct
ggtcctccaggacttaggggcttcagaggcagcagaggggctgccgggggcatgggtcct
gctggtctgaaaggaggtgaaggaccagtcggagcagcaggagctataggggccggtggt
gagaggggtcccccagggtcagccggtgccattggtcagcctgggagggcaggggctgtg
ggtggacctggaccaatgggagagaagggggaaccgggaggggcgggtcctattggacca
tcaggacaggatggagaccagggacctctaggactacctggagctgcaggccctgcagga
cccccaggagaggatggggataagggagagactggaggaccagggcagaagggcagcaaa
ggagacaaaggagaatcaggcccctcaggaccaaccggtggccaggggccgatggggcag
tcaggagttcctggtgtggatggggagtcaggtcccaggggccagcagggaatgtacggg
gccaagggagacgagggtctccggggtttcaagggctccaaaggacccatcggactacag
gggatgcctggtctaccaggggagaagggggagagcggacacatcggcttgatgggtcgt
ccaggtcagtttggtcccagagggccacaagggcctagtgggggacagggtgctctgggc
agaccaggtggggctggacagccaggggtaaatggagagaagggggaggatggagaatcg
ggagacccaggacctgttggtgtatcaggaggcaacggggatataggtgaccagggggag
aagggggactcaggtctctctggagcagcagggcccccaggagccagaggccccccagga
gaggatgggtccaagggaacctctggtccgattggtttcccaggagactcaggacagcca
ggggaggcaggacccaacggggaggatggaggtcctggatccaagggagatggtggagat
ccagggaaatcaggtccaccaggagcatcaggggaacccgggccctcaggaccaccggga
cgcaggggtcacctgggtaaagaagggaagcaggggaaagcagggatgaaaggagggaag
ggctctccagggttggagggtctcctggggaagacaggaccggtgggagcccagggacat
tctggtaaaccaggtcccagtggtctcagagggatccctggcccagcgggggaacaaggt
ttaaatggaccaccaggcgtaacaggaccaccaggacccatgggtcctccaggactaccg
gggttgaagggagatccaggcaggaagggagacaagggtcatggaggtctgattgggctg
ataggccctccaggagagtttggagagaagggagacagaggatttccagggaaccagggt
ctactggggcccaaaggagacgagggtctggttggtctagcaggtcctaatggtcctcca
ggtctacctggtctctctggtagagtaggacagaagggttctaaagggaatcagggtccc
attggtgctatcggagatacaggtcctgctggccctcctggacctcctggtctccctgcg
gtgggtcttcagtctctcccggtgcaggagagaggaaggaggaggaggcagcactcttcc
tttgacggggccgccctggaagacgaggacgagcaagaggggatggagggaagggaggac
ggagaggaggagaggatgcaggcagaccaggcagggcaggaggaggagaaagagatggag
gaggtgtttgcttctctctcttccatgaggacggaggtagagggtctgaggacccccctg
gggacctaccagtatccagcccgaacctgcaaggagctacagctgttgttcccaaagtac
actgatggtgagtactggatagaccctaaccagggttgccatagagactccttcaaggtg
ttctgtaacttcacggccgatggagagacatgtctgtaccctgacatgaagttccagtcg
gtgaagctgagttcctggaaaggagagaaacctggtacctggtacagccagttcaggaaa
ggaaagcagttctcctattccggttcagatggcagtccggtccatgtagtccagttggtg
tttcttaagctgttgagtgcttcatccagacagacgttcacctaccactgtcagaactca
gccgcatggctccataccgccaccttcagccaccagcacgcgctgcgcttcagagggagc
agtggagaggagctcacgcaccagaacacacactacatcacagcactgcacgacggctgc
cagtctgcttcaggtcaggagaggacggtgttagagtttgatgcccctcagtcagactct
ctccccctcatcgacgtctctgtctccgacttcggacacaacaaccagaagtttggcttc
caactaggtcccgtctgcttcaacggttaa
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