Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424311
Help
Entry
139424311 CDS
T10872
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04137
Mitophagy - animal
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139424311
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
139424311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139424311
03009 Ribosome biogenesis [BR:
ocla03009
]
139424311
04131 Membrane trafficking [BR:
ocla04131
]
139424311
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139424311
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
139424311
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
139424311
Membrane trafficking [BR:
ocla04131
]
SNARE
SNARE associated proteins
Others
139424311
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139424311
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139424311
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
TIP49
AAA_14
RNA_helicase
NPHP3_N
AAA_28
nSTAND3
ATPase
AAA_17
Mg_chelatase
Vps4_C
Parvo_NS1
ATPase_2
AAA_18
AAA_7
ABC_tran
ResIII
DUF815
IstB_IS21
AAA_24
NB-ARC
SLFN-g3_helicase
Viral_helicase1
nSTAND_NTPase5
NACHT
Zot
Motif
Other DBs
NCBI-GeneID:
139424311
NCBI-ProteinID:
XP_071032119
LinkDB
All DBs
Position
13:complement(5109067..5138640)
Genome browser
AA seq
802 aa
AA seq
DB search
MPAPGGTDPKGEDFSTAILKQKHRPNRLVVDEAHNEDNSIVSLSQAKTEELQLFRGDTVV
LRGRKRRETVCIVLTDDTCPDERVRMNRVTRNNLRVRLGDVISVHACPDVKYGVRIHVLP
IDDTIEGLTGNLFDVFLKPYFLEAYRPVHKGDIFLVRGGMRAVEFKVVETDPAPHCIVAP
DTVIHCEGQPINREDEEESLTDVGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP
AIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKQRTHVIVMAATNRPNSIDPALR
RFGRFDKEIDIGIPDSTGRLEILQIHTKNMKLSDDVDLERVSMDAHGHVGSDLAALCSEA
ALQAIRKKMTLIDLEDDTIDAELLNSLAVTNDDFRWALGQSNPSALRETVVEVPNVNWED
IGGLGEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FISIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGGAGDAGGAAD
RVINQILTEMDGMSNKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDTASRTAILN
ANLRKSPIARDVDLAYLSGITQGFSGADLTEICQRACKLAIREAIEAEIKAERQRQTHPG
TAMDEDCDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSGSQ
SGDQGSGSGGQFRDEVEDDLYQ
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcccctggaggaacagatcctaagggggaggatttctccactgctatcctgaag
cagaaacacagacccaatagactggtggtggatgaagcccacaatgaagacaacagcatc
gtcagcctctcacaggcgaagacagaggagctgcagttgttccgtggcgacacggtggtc
ctgcgggggaggaagcggcgtgagacggtgtgtatcgtgttgacagacgacacctgtcca
gacgaacgcgtccgcatgaaccgcgtcacacgcaacaacctgagggtacgcctcggtgat
gtcatcagtgtccatgcatgcccagatgtgaagtacggcgtgcgtatccatgtcctgccg
atagatgacaccatcgaagggttaacgggaaacctgttcgacgtcttcctgaaaccctat
ttcttggaagcctatcgacctgtacacaaaggcgacatcttcctggtgcgagggggcatg
cgggctgtggagttcaaggtggtggagacagaccccgccccccactgcatcgtcgccccg
gacaccgtcatccactgcgagggacagccaatcaacagagaggacgaggaggagagtctg
actgacgtaggctatgatgacattggaggttgtcgtaaacagttagctcaaatcaaagaa
atggtggagcttcccctcagacatcctggactattcaaggctataggagtcaagcctccc
aggggtattctgctgtatggacctccaggtacagggaagacactggtcgcccgggccgtc
gccaacgagactggagcattcttcttcctcatcaatggtcctgagatcatgagtaagatg
gccggggagtcagagagcaacctgaggaaagccttcgaggaggcagagaaaaactctccc
gccattattttcatagacgaactggattctatcgctcctaagagagagaagacccatggg
gaggtggagaggcgtatcgtatcacagctcctcaccctgatggatggactgaagcagaga
actcacgttatcgtcatggcagccaccaacagacccaacagcatcgaccctgccctgaga
cgcttcggcaggtttgacaaagagatcgacatcggcatcccagactccactggtagactg
gagatactacagattcacaccaagaacatgaagctatctgacgacgtggacctggagagg
gtttccatggatgcgcatggccatgtggggtcagacctggcagctctgtgttctgaggcg
gctctgcaggccatcaggaagaagatgaccctgattgatctggaggacgacaccattgat
gctgaactgctcaactcactggcagttaccaacgatgacttcaggtgggcgttggggcag
agtaacccgtcagctctgagggagacagtagtggaggttcctaatgttaactgggaggat
ataggaggactgggagaggtcaagagagaactgcaggaactagtacagtacccagtggag
tacccagataagttcctgaagttcggtatgaccccgtcacgaggagtgttattctatgga
cccccaggctgtggaaagaccctgctagccaaggcgattgctaacgagtgccaggccaac
ttcatctccatcaagggacctgagctgctcaccatgtggttcggcgagtcagaggctaat
gtcagggacgtcttcgacaaggccagacaggcggccccctgcatcctgttctttgacgag
ctggactccattgccaagtccagagggggcggagccggggacgcagggggcgcggccgac
agggtcatcaaccagatcctcacggagatggacggaatgtccaacaagaagaacgtcttt
attataggagctaccaacagacctgatataatagactctgctatcctccgtccagggagg
ctggatcagctcatctacatccctctaccagacacagcctcccgtaccgccatcctcaac
gcaaacctacgcaagtcccccatcgccagagatgtagacctggcctacctgtctggtatc
acccagggtttcagtggggcagacctgacagagatctgccagagggcctgtaagctggcc
atcagagaggccatagaggctgagatcaaagcagagcgccagagacagacccacccaggc
accgccatggatgaggactgtgaccctgttccagagatcaggaaggatcactttgaagag
gccatgaggttcgcccggcgctccgtcagcgacaacgatatcaggaagtatgagatgttc
gcccagacactacagcagagcagaggctttgggaacttcaggttcccctctggctctcag
tccggagatcaagggtcggggtcaggggggcagttcagagacgaggtagaggacgacctc
taccagtga
DBGET
integrated database retrieval system
