Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424510
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Entry
139424510 CDS
T10872
Name
(RefSeq) transmembrane channel-like protein 5
KO
K21988
transmembrane channel-like protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139424510
03037 Cilium and associated proteins [BR:
ocla03037
]
139424510
Transporters [BR:
ocla02000
]
Other transporters
Pores ion channels [TC:
1
]
139424510
Cilium and associated proteins [BR:
ocla03037
]
Other cilia and associated proteins
Stereociliary proteins
139424510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
139424510
NCBI-ProteinID:
XP_071032533
LinkDB
All DBs
Position
13:16548507..16576816
Genome browser
AA seq
1018 aa
AA seq
DB search
MSHYNNTGVYNNPAYHDSDTLEIDRSPSRKSQSHHSNPHGNPYPRDDGAGGQRGRSDLQQ
LPGGVQSSYNDAQERVPWGGWQEGSWRGRDSIPMGLLPPRSESARWQQHDLNHSGYQIDQ
ATHYDTTPPVRLPSATSGHVSMRFRGSRKMSLFPVGEAALGNLGLSVDDIRNEMENEEQN
LVKELVAMSTRDRIKAIRDLPMSFDDKKHIRGQVLALKSFKKSRQLNCFSDCSTTVSLAF
RRCGANMTLAKQTLELWRGTMKEVGGKFGTGVLSYFKFLKWLLMFNIFSFLVNFGFITIP
QLIYHPTPDIPAGVSFKGLEILTGAGYFSHTVMYYGGYSNKTQGTGGRSEYNMQLAYFFT
IAAYMVLCGAALIYSMASSFRKKYVLADSGLGGAWQLLCSWDFSVTNEKAVRQRKNNLRI
QLKESLSEKIQVALLPLTERLKHYGVFLGTWLLSTGMALGCGASVYFLCQYDTWRTRQSA
DKASGSLLQEAATLLLPFVVSLINLVVPLFYSLFKKIEHYSNPRMQVYAIIVRNVILKMS
ILGILCYYWMKDVANTFSCWESIVGQALYRLVIMDFLFIMLGSFFGEFLSNVIGTKCIQS
LGVPEFDVARNVLDLIYAQTLAWIGIYFSPLLPVIQIIKFFILFYLKKVSLTQNCQPPRR
AGRAAQMQTIFIAILFFPSFVGALSMVAYTVWTLPPSDKCGPFRGLNTTFSAIQIWMDDL
NRVDAFQWTVWIYQHVIRSEIFYFLISLIILVFIYIFRQITQGRQLLITLLRQQIVNEGK
DKAFLLEKLQTLQKSKQNKQKNKKQVRKRQENESSTGMLQALIARQRLEQENGDSSSSFG
VPMPSGLSVSTTSSAMMQAMLARQYAEDQDVASYRGVPFPADQTPAPSSALIQAMQARQR
AESQNEDEFYRAPVQSQNPVNALPSAMIQVMQARQRAESEQEEDEFYRAPVHSEHPVSST
SSAMMQVMQARQRAEEEESEFYRAPASSQHPDASGTGSALIQAMLARQQVEEEYSDRF
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcactacaacaacactggagtatataacaaccctgcctatcatgacagtgacacc
ctggagatagataggagtccttccaggaaatcccaatcccatcatagtaacccacatggt
aacccctaccccagggatgatggagccggggggcagaggggcaggtccgacctccagcag
ctcccaggaggggtccagtccagctacaacgatgcccaggagagagtgccctggggcggg
tggcaggaggggagctggaggggcagagacagcattcccatgggtctccttcctccccgg
tcggagagcgcacgatggcagcagcatgacctcaatcacagcgggtaccagatcgaccag
gcaacgcattatgacacaacgcctcctgtacgacttccatctgcaacttcaggtcatgtt
tcgatgaggttcagggggtcgaggaagatgagtctattccctgtaggagaggctgctctg
ggcaatctgggcctttctgtggacgacatcaggaatgagatggaaaatgaggaacagaac
ttggtcaaagagctggttgccatgtcaacgagggacagaatcaaggccatccgagacctc
cctatgagctttgatgacaagaaacacatcaggggccaagtgttggcgttgaaatcattc
aaaaaatcccggcaactgaactgcttttcagactgctcgacgactgtctcactggcgttc
cgcaggtgcggtgctaacatgactttagccaagcagaccctggaactgtggcggggtacc
atgaaggaggtcgggggtaaatttggcacgggggtcctctcctacttcaagttcctaaaa
tggctgctgatgttcaacatcttctccttcctggtcaactttggtttcatcaccatcccc
cagctcatctatcaccccacgccagacatccccgctggggtcagcttcaaagggctagag
atactgaccggagcgggttatttcagccacacagtgatgtattatggcggctacagtaat
aaaacacaagggacagggggccggtctgagtacaacatgcagctggcctacttcttcacc
atagcagcctacatggtgttgtgtggagccgccctcatctacagcatggccagctcgttc
aggaagaagtatgtccttgcagactcaggcttgggtggagcctggcagctcctgtgtagc
tgggacttcagtgtgactaacgagaaagccgtacgacagcgcaagaacaatctgcgcatc
caactcaaggagtccttatcagaaaagatccaggtggccctgctacctctgacagagagg
ctgaagcactatggggtcttcctgggtacctggctcctctccacgggcatggccttgggc
tgtggcgccagtgtctacttcctgtgtcaatatgacacatggcggacgaggcagtcagcg
gacaaagcttccggctctctcctgcaggaggccgctactctcctcctcccctttgtggtg
tccctgatcaatctggtcgtccctctcttctactctctgttcaaaaagatagagcactac
tccaaccctcgcatgcaggtctatgccatcatagtcagaaatgtcattctcaagatgtcc
attctgggtattctctgctactactggatgaaggatgtggccaatacattttcatgctgg
gagtccatcgtaggacaagccttgtacagactggttattatggacttcctcttcataatg
ttaggatccttctttggagagttcttgagcaatgtcattgggactaaatgcatacagagc
ctgggagttccagagtttgacgttgccaggaatgtccttgacctgatctatgcacagacc
ctggcatggatcggaatatacttctctcccctcctcccagtgatacagataatcaagttc
ttcatcctcttctacctaaagaaggtcagcctgacccagaactgccagccccccaggcga
gccggcagggcggctcagatgcaaaccatcttcatcgctatcctcttcttcccttccttc
gtgggggctctgtccatggtggcctacaccgtgtggactctgcccccctcagacaagtgt
gggcccttcaggggcctcaacaccaccttcagtgcaatacagatctggatggacgatttg
aacagggtggatgcgtttcagtggactgtctggatctaccagcacgtcatcaggagtgag
atattctacttcctgatctccctcatcatccttgtcttcatttacatcttcaggcagatc
actcagggacgccagctgcttatcactctactgagacagcagattgttaatgaagggaag
gacaaggcgttcttgttggagaagctacagacccttcagaaatccaagcagaacaaacag
aaaaataaaaaacaggtcaggaaaagacaggaaaatgaatcctctactggcatgctccag
gctctgattgcccgacagcggttggagcaagagaatggtgacagcagcagctctttcggt
gtgcctatgccttccggcctctcagtctccacgacatcgagtgctatgatgcaggccatg
ctagccaggcaatacgcagaggaccaggatgtagccagttatcgcggggtgccatttcct
gcagaccaaacacctgcgccctccagtgcactgatacaggccatgcaagccaggcaaagg
gcggagtcacagaatgaggacgagttttaccgggcgccagttcagtcacagaacccagta
aacgcgttacccagtgcgatgatacaggtgatgcaagccaggcagagggcggagtcagag
caggaagaggacgagttttaccgggcgccagttcattcagaacacccagtgtcatcaaca
tccagtgcaatgatgcaggtcatgcaggccaggcagagagcagaggaggaggagagcgag
ttttaccgggcgcctgcttcttcacagcacccagatgcgtcaggcactggtagtgctctg
atacaggccatgctagcccggcaacaggtagaggaggagtacagtgacagattctga
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