Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424519
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Entry
139424519 CDS
T10872
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
90S particles
Other 90S particles
139424519
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139424519
NCBI-ProteinID:
XP_071032544
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Position
13:complement(17091973..17117614)
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AA seq
1810 aa
AA seq
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MASTEEDFPRGGKTKQTTESKAEPVRRHTEVDNLFETHTAEESKKRKGQKGDALKKAKRQ
RTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADLEVTINLPSGLLGYLNISNIS
DSYTKILSDHLDSASSEEIFSLASLFSPGMLVRCVVARLDTAKGGSVSIQLSINPKEVNK
GLSTGFLKAGLILSGCVESIEDHGYLVDLGIKGTKAFLPKQAAKDKTNSPKELKVGQYVT
SLLEEVKNDERVVRLSISPTAVAQAVADTAHGWTLTSLLPGLLVKAQIKKVTLHGLILEF
LSSFTGLVDFMHLEPEQASTFNEGDNVKACVLYVEPSTRLVGLSLRSHLLQPGGDVDLVA
TERIGEVAHGCKMTALHHLSGAMLELPDQTVVFVHRNHMKEPMEAFNLNRVMAKPEHTCR
IMDFSPMEQVHLVSLRQSIVDAPFFRRYHDIQPGQIVQGTVTSLQNHGMMVKVTDYIRGL
VPRTHLSDIILKNPEKQYAVGMIIKCRVLSVDPRAKKLTLTRKRALIDSSLPPFLTYEDA
RRGHVSHGFIVCVKDFGCIVCFYGKVKGLVPPNELSTEPVIVPENVFYVGQVVKAKVLNC
DVKKEKLLLSFKAVAGGDTEGPPKPKFDFEVGKKVEVKVVSKFLTGLEVSILPEEIPALL
PMIHLSDHVSNCLLLWEGLQEGDIISNIVCLSKKKQTITLTKKPTLKSFLEEGGVVAKEF
SDITVGVQLIGWVNNIMPYGVFVEFPYGLVGLAPKAAMSDKFVGDTAAHFQLGHTVVAKV
TNLDEEKHRFLVSLKVSEVPSPERDGQARLIRGLQERKAVMEMMASRGDSDLLKQLSAVT
IGQRMKMSVDEVREDGSVTFKSDELSAATVLATKDHAPGKLAMGQECMPVILHVDLVTSE
VYVSLLAKLTGKRKAVEAGSTHTATVHHADRDFAVISLGDTAQLTVIQTTNHLNETFRFD
AEKLTAGKTLTITVTKSSCEELEGLPLVSWELAPPISKRLISNSKRSKGMYRYGDVVKGK
VKTVKPTCVLVTLEDGSTGCVHVSEIQEVVCVGTFPTSFLKIGSEVTARVIGGREGNSHR
FLPFSHPNFTYSMPELTLLPRNLKEDADVKPVKTKEKLRRYQVGDDVICFVSKYFPNRKC
LEVTTGPSVTGTVEQLAMTSDPEGAKHPEKLFKLGQAVSAKVVTVSSSKPSRLSLSLNGV
HKLEKGHVIMGLVQKLDPNLGLLVKLPFSAMGTVAMEDLADKYKPKPLERYSKDQLVRCC
IVGEAKSNWQLSLRSSRTNPEKASVVKDPEIVSLDDLSEGQIVRGYVRTVNAQGVFVSLS
RSIKGRAQFQKATKYFLASHQDYAKKVPQSTLLTTKILSIDKESGLVDLSLLQEDTGKPD
VLPESLGLHLRLTGEAKEKRDATKKRKRTESESKQGTAENVSTKKKKTKKGKGEDSDSGV
EVYFREEVEENKCEPAEVEKPVPVQPARLQVTGGFSWDAALSALKPASAALGGEDSSDGE
DGEVNIKPQKKSHHVQEVEKREAEKALTKLETELMDPGLRPQTAASFERLLLGSPDSSLL
WLQFMAFHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLQKVF
ERAVQYCEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQEKAVWLSYGTFLLQQGQS
DAASALLQRAIKSLPNKDNVDLIAKFAQLEFRYGDVERGKAMLDRILTSYPKRTDLWSVF
IDLMVKHGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKSGTPESIQAVKDKALEY
VESKGTEAAR
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacggaggaggacttccctcgcggaggtaaaaccaagcagaccactgaaagt
aaagcagaacctgtgagaaggcatacagaagtggacaatctgttcgagacacatacagca
gaggaatccaagaaaaggaagggacagaaaggggatgccttgaagaaagctaagaggcaa
aggacgagcaaagaggaggctctgaagctcaatacaacaacctctgtagatatcctacag
ttaaaaagcctgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagattta
gaggtgacgattaacctgcccagcggccttctgggatacctgaacatttccaatatctcg
gactcgtacaccaagatactgagtgaccacctggactctgcttcttcagaggagatcttc
tcactcgccagtctcttctccccgggcatgctggtcaggtgtgtggtagccaggttggac
actgccaaaggaggatcggtcagcattcagctgtcaatcaaccccaaagaggtcaacaag
ggcttgagtactggctttctgaaggctggcttgatcctgagtggttgtgtggagagtatt
gaggatcacggctacctggttgacctcggcatcaagggaaccaaggccttcctgcccaag
caggcagccaaagacaaaacgaatagtccgaaagagctgaaggtgggccagtatgtgact
tctctgttggaggaggtgaagaacgatgagcgtgtggtccgtctgtccatcagccccacg
gcggtggcccaggccgttgcagacacagcgcacggctggacccttaccagcctgctgcct
ggcctactggtcaaggcgcagatcaaaaaggtgaccctacatggtctgattctggagttc
ctctcctccttcaccggcctggtggactttatgcacctggaaccagaacaggcctccaca
ttcaacgagggagacaacgtgaaggcctgcgtcctttatgtggagccgtccacccggctg
gtgggcctgtccctgcgcagccacctgctgcagccagggggcgacgtggacctggtggcc
actgagaggataggggaggtggcgcatggctgcaagatgaccgctctccatcacctgtct
ggagccatgctggagctgcctgaccagactgtggtgtttgtacataggaaccacatgaag
gagcccatggaggcgttcaacctgaaccgtgtcatggccaagcctgaacacacctgtagg
atcatggacttcagccccatggagcaggtgcacctggtcagcctgcgtcagagcatcgtt
gatgccccgttcttcagaagataccatgacatccaacctggacagattgttcagggcacg
gtgacgtccctccagaaccatggcatgatggtgaaggtgaccgactatatcagaggcctg
gttccccggacacacctctctgacatcatcctcaagaacccagagaagcagtacgcagtg
ggcatgatcatcaagtgccgggtgttgtcggtggacccacgggcaaagaagctgacccta
accaggaaaagggccctgatagattcctccctccccccgttcctgacctacgaagatgcc
cgccgcggtcacgtctcccacgggttcatcgtctgtgtcaaggactttggctgcatcgtc
tgtttctacggcaaagtcaaggggctggtgccccccaacgagctcagcacggagccagtg
atagttcctgagaacgtgttctatgtcggacaggtggtgaaggctaaagtgctgaactgt
gacgtgaagaaggagaagctccttctttccttcaaggcagtggcaggaggagatactgag
ggaccgcctaaacccaagtttgactttgaggttgggaagaaagtggaggttaaggtggtg
agtaaattccttaccggtctggaggtgtccattctgccagaggagatccccgccttgcta
cccatgatccacctctccgaccacgtgtccaactgtctactgctgtgggaggggctgcaa
gagggtgacatcatctccaacattgtctgcctcagcaagaagaaacagactattaccctg
actaaaaagcccactctgaagtcattcctggaggaggggggcgtggtggctaaggagttc
tctgacatcacagttggggtgcagctgattggctgggtcaataacatcatgccctatgga
gtgtttgtggagttcccctatggcctggttggcctggcccctaaagcggccatgagtgac
aagttcgtcggcgacaccgcggctcacttccagctgggccatacggtggttgccaaggtg
accaacttggacgaggagaagcacaggttcctggtcagtctcaaggtgtcagaggtcccc
tcccctgagagagacggccaggccaggctgatccgaggcctgcaggagaggaaggcggtg
atggagatgatggccagcagaggtgactctgacctactcaagcagctgtctgcggtgacc
ataggccagaggatgaagatgagcgtagacgaggtgagggaggacgggagtgtcaccttc
aagtcagacgaactcagcgcagccaccgtactggccaccaaggaccatgcgcctggtaag
ttggcgatgggacaggagtgcatgccggtaatcctccacgttgacctcgtgacctctgaa
gtctacgtgtccctcttggctaaactgaccggcaagaggaaagcggtggaggcagggtcc
acgcacactgccactgtgcatcacgccgaccgcgactttgccgtcatctcattgggcgac
acggctcaactgacggtcatccaaaccaccaatcacctcaacgaaacgttccgcttcgac
gctgagaaactgaccgccggtaaaaccctgacgatcaccgtcaccaaatccagctgcgag
gaactagaagggctccccctagtgtcctgggaactcgcaccgcccataagcaaaagatta
atctccaactccaagaggtcgaagggcatgtatcgctacggcgacgtggtcaaggggaag
gtgaagacagtgaagcctacgtgtgtgctggtgacgctagaggacgggagcacggggtgc
gtgcacgtgtccgagatacaggaagtggtgtgcgtgggaacattccccacgtccttcctc
aagataggaagtgaggtcacagcccgagtcattggaggacgggagggcaacagtcacagg
ttcttgccgttctcccatcccaacttcacgtactccatgcctgaactcacacttcttccc
aggaacctgaaagaagacgcagatgttaagcctgtcaagaccaaagagaagctgaggcgt
tatcaggtcggcgacgacgtcatttgctttgtgtcaaagtactttccaaataggaagtgt
ctagaagtgactactggtccctcagtaactggaactgttgaacaactggccatgacctct
gaccctgaaggtgccaaacacccagagaagctgttcaagctgggccaggcggtcagtgct
aaggtggtgacagtcagctcctccaagccctcacgcctctcattgtccctcaatggtgta
cacaagttggagaagggccatgtaatcatggggttggtgcagaagctagatccaaacctg
ggtctgctggtgaagctgccgttcagcgccatgggaacggttgccatggaggacctagcc
gacaaatataagccaaaacctctggagcggtacagcaaggaccagctggtcaggtgctgc
attgtaggagaggcgaagagcaattggcagttgtccctccgctcttcgaggacgaaccca
gagaaggcctcagtagtaaaggacccagagattgtgtctctagatgacctgtcagagggg
cagatcgtcagaggctatgtgaggactgtcaatgcacagggagtctttgttagtttgtct
agatccataaagggcagggcccagttccagaaggccactaagtactttttggctagccac
caagactatgccaagaaagtaccacagtccacactgctcaccaccaagatcctcagcatc
gataaagaaagtgggctggtggatctgtctctgctccaagaggacactgggaaaccagac
gtgctcccagaatccctggggctgcacctgcgcctgacaggagaggccaaggagaagcgt
gacgccaccaagaagaggaaacgcacggagtcggagagcaagcagggaaccgcagaaaat
gtttcaacgaagaagaagaagacgaagaaggggaaaggagaggacagcgacagcggagtg
gaggtgtacttcagagaagaagtggaggaaaataagtgtgagcctgcggaggtagagaag
cccgtcccagtgcagccggccagactgcaggtgaccggagggttctcctgggatgcagcg
ctgagcgccctgaaaccagcgtccgctgccctggggggagaggactccagcgacggggag
gacggcgaggtgaacattaagccccagaagaagtctcaccatgtgcaggaggtagagaag
cgggaggccgagaaggccctgaccaagctggagacggagctgatggacccaggcctgcga
ccccagacggcggctagctttgagcgcctgctactcggctcccctgacagctctctgctc
tggctgcaattcatggccttccacctgcaggccacacagatagaacaggctagagcggtg
gctgagagggctctgaagactatctccttcagagaagagcaggagaagctgaatgtgtgg
gtggctctgttgaacctggagaacctgtatgggacagaggagagtcttcagaaggtgttt
gagcgagccgtgcagtattgtgaacccatgcccgtctaccagcagctggctgacatctac
gccaagtgtcagaagactaaggaggcggaaggtctgtacaagaccatggtgaagcggttc
cgtcaggagaaggctgtgtggctgagctacgggaccttcctgcttcagcagggtcagagt
gacgcggccagcgccctgctacagagggccatcaagagcctgccgaacaaagacaatgtg
gatctgatagccaagtttgcccagctggagttccgctacggagacgtagagcgaggaaag
gccatgttggacaggatcctgaccagctaccccaaacgcaccgacctgtggtccgtcttc
atagacctcatggtcaaacacggctcccagaaggaagtccgggctgtgtttgaccgtgtg
atccacctgagtgtggcggtgaagaggatcaagttcttcttcaagcgttacctggagtat
gagaagaagagcggcacgccagagagcatccaggctgtcaaggacaaggctctggagtac
gtggaatctaaagggacagaggccgccagatag
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