Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424537
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Entry
139424537 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139424537
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139424537
NCBI-ProteinID:
XP_071032573
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Position
13:17974094..18001594
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AA seq
1626 aa
AA seq
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MDNLTKTKIVNAGASGKVVKETVTTTTRLTSLPPKGITNSIVSNQKSVSSSSSSGVSVVE
RKVISQSSGSSSSSGLSSRSGLLSIGRGESTSRAITGGSSSVLVSSSAAAGSGGGAKSGY
GGRSVSKSTTITTIESPSLSYGALGASGAAFRSSGASGASFGASKTSGSLSISGGGLMSS
SSSFVTGSSSGSSSGFSSSSGTGIGGGGSSSAKMSAGGLGSATVSTVTRSNYSSSAGAGS
GGVKRGGAQGSASSAVSFSPTPTERKSMTTTMTARSMGYEGQSSGNSSPEYTRREYAAAS
AAASTPTRGRSHSRESEIRCRLQSASPTAKRWTELEDVKRLLKGSRSSSISPPRSPTSTL
PIPRKARVETRTMPNSFQSGQYDSATLDLGMPSYMWSGPTAGGYGYHSNAINLSPTSTLQ
HSPITLTGLQNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGILTANGVNAQTVYGVQK
NVTSTGVSTTTVAASSPTSDEENTPVKKETERLVMAKETGKQFSSAATAIAYSEDSLKKE
KKKVSSFVETATARTTDTNAGSLMKVSTKDKATTYPEMRKDESGGGLGFWSCCSWWKWLL
GLLLGLLLLLGLLLGLIALAEEVRRLKARVDALEQASSSSSAHSSRLSSSSAINIIDPLG
SAYIDKTSSTSSTTLLRSDNGINLGVAAGAGPGSANGRGQDSVALQRAVQQIVRTELQSD
TVRATLAHSMKGARGEPGTKGDQGAPGVKGDNGFPGLPGPPGQMGHSGLEGPRGPKGNAG
EAGAEGPPGQRGREGPTGSRGEPGPPGFGEKGDKGSPGEPGGPGPAGTAGPVGPKGSVGG
QGTTGIPGTPGPQGFRGEGGAPGPKGEKGPAGPPGNKGEPGEKGLRGTSGDPGQKGLPGP
DGTKGSKGPAGAPGADGEKGSRGDKGSDGLPGPRGPAGPPGDAGLPGIPGLQGPPGIPGN
PGQPGGKGEAGEPGRIINAAGSSSVAIPGPPGIPGHAGVAGSPGLSGPVGPAGLPGTPGP
RGENGEEGEKGDQGKPGITVQTVETTERRAPVASLPGPPGPPGPPGKPGAQGKGPPGPQG
PQGEPGVGVPGPRGDKGEPGSFVPNSGTFFAGPPGPAGPTGLPGSPGTPGPQGYQGDPGQ
PGLPGVPGDPGVGFPGPQGQPGGPGPEGDSGLPGPQGPEGPEGQPGPKGEAGVPGAPGIP
GYSSGGSSRSSPGAPGPPGPPGRDGPPGSGSGTPDVRQYITEYLKSDGVREYMSGPPGPP
GVPGPPGGGSVESVDDLASRVIAYIQSGGIASGVPGPPGPPGAPGGGSTSLNDIISLLQR
EEVRRYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLTLMNEQGMVGMLGSPGPPGP
PGLPGSYSDISYLLQNTEYRGVLGAQGPPGPPGVPGPAGPQGPAGPSGQAPYSSSGYRLE
EVKDYIQSDGIRGGMFGLPGPPGPPGSQGHKGEQGSSGYGHAFDHRTSEGRRLVETETDY
SNIAVRVTDYIKYHGLLRDVVENRSQLEKSQVVQGPPGPPGPPGAPGFSRVFGSHSNATD
LVEYIRAHGNIVGPPGRPGQKXGHTGHKGERGLDGIPGRTGLPGLEWKRGGEHTLVTHRR
RRNVGV
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgaaaaccaagattgtaaatgctggtgccagtggcaaggttgtcaaa
gaaacagtaaccacaacaacacggttgacatcactgccgccaaagggaatcactaactct
atcgtctccaaccagaagagcgtgtcctcgagcagttcaagtggagtttccgttgtggag
aggaaggtcatctctcagagcagtggtagcagcagcagtagtggtctctcttcgaggagt
gggctgctctctattggaagaggagagtctaccagtagagccatcacaggaggcagtagc
tcagtgctagtatcctcctctgctgcagccgggtctgggggtggagctaagtctgggtac
ggagggagatccgtcagcaaatcaaccaccattaccactatagagtccccctctttatcc
tacggtgctttgggggcctctggcgcagcttttcggtcttcaggggcctctggggcatcg
tttggggctagcaaaaccagcggctccctctccatttctggagggggtctaatgtcaagc
tccagcagttttgtcactggttccagttctggttctagttctggtttttcctctagttct
ggtaccggaatcggaggagggggttcttctagtgccaaaatgtcggccggcggcttgggc
tctgcgaccgtttccacggttaccaggtccaactacagctcctcggcaggggcgggttca
ggaggcgtgaagaggggcggggcacaggggtctgcatcctctgctgtcagcttctccccc
acccccacggagagaaagagcatgaccaccaccatgaccgcccgctccatgggctacgaa
ggtcaatccagtggaaactcatctccagaatacacaaggagagaatatgctgcagcaagt
gcagctgccagtacacccaccagagggcggagccacagcagagagagtgagatcagatgc
agactgcagagtgcctctcccacagccaaaagatggacggagctggaagacgtgaagcgg
ctgctgaaggggagtcgctccagcagcatcagcccccctcgctcccccactagcaccctc
cctatccccaggaaggcccgcgtagagaccagaaccatgccaaacagcttccagtcaggc
cagtacgacagtgccaccctggatttaggaatgccttcctacatgtggtcaggccccacg
gctggaggctacggttaccacagcaacgccatcaacctgtcccccacctccaccctccaa
cactcaccgatcacactcacagggcttcagaacaacctggccctcagctctacatccatg
aactctggactctctgcctctagcactgttcacggtatgcagaataacctggcctccacc
actggcggtatcctaacagcgaatggagtcaacgcacaaacagtctatggtgtgcagaaa
aatgtcacaagcacaggggtgtccacaaccacagtggcggccagcagtcccaccagtgac
gaggagaacactcccgtcaaaaaggagacggagagactcgtcatggccaaagagaccggc
aaacagttctcctctgctgccactgctattgcctattctgaggactcactgaagaaggag
aagaagaaggtgtccagctttgtggagacagctacagccagaaccacagacactaacgct
ggatcattgatgaaagtgtcaacgaaagacaaagcaacaacctatccagagatgcgtaag
gacgagtctggaggaggtctgggcttctggtcctgctgctcctggtggaagtggctgctg
ggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatcgccctggcc
gaagaagtcagacgtcttaaagctcgtgtggatgccttggaacaagcctccagctcttcc
tcagcccattccagtcgcctctcctcctcctctgccatcaacatcatagaccctctgggg
tctgcgtacatagacaagacctcctcgacctcctctaccacactgctccgctctgataat
ggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaatggacgaggccaa
gactctgtagctctgcaaagggcagtacagcagatagtcaggactgagctgcagtccgat
actgtacgagcaacacttgcacactcaatgaaaggagcgagaggagagcctgggaccaaa
ggtgaccaaggtgctccaggagtcaaaggtgataatggattccctggcctaccaggtcct
ccaggtcagatgggtcacagtggactggagggcccgaggggacctaaaggaaatgcaggt
gaagctggtgcagagggccccccaggccagaggggccgagaaggaccaacgggatcacgt
ggagagcctggtcctccagggtttggagagaaaggggacaaaggttctcctggtgaaccc
ggaggccccggacctgctggcactgctgggcctgttgggcctaaagggtcagtgggtggt
cagggtacgacaggtatcccaggaactcctggcccacagggtttcagaggggaaggaggt
gctccaggaccgaaaggagagaagggaccagctggacctccaggaaataagggcgagcca
ggagagaaaggactccgtggaacatcaggtgacccaggtcaaaaaggacttccaggacca
gacggaacaaagggatccaaaggacccgcaggtgctcccggggctgacggtgaaaaaggc
tctagaggtgacaagggatcggatggattaccaggtccaagaggaccagcaggacctcca
ggagatgcaggcctcccaggcattcccgggcttcaaggtccaccaggtataccaggtaat
ccaggtcagcctggaggtaaaggtgaagctggagaacctggtagaatcatcaatgcagct
ggttccagttcggttgccatccccggacctccaggcatccccggacacgctggtgttgcc
ggatcccctggactctcaggtcctgttggccctgctggtcttcctgggacgcctggtccc
aggggagaaaatggagaggaaggagagaagggagatcagggaaagcctggtattactgta
cagactgtggaaaccacagagagacgtgcacctgtggctagtcttcctggcccacctggc
cctccagggcccccaggtaaaccaggtgcccagggtaagggtcccccaggtcctcaaggt
cctcaaggagagccaggtgttggtgtgcccggcccccgaggagataagggagagccaggt
agcttcgtgcccaactcaggaaccttcttcgctgggccaccaggacctgctggcccaact
ggccttccgggatcaccaggtacaccaggtccccagggttaccaaggtgacccaggtcag
cccggtttaccaggagttcccggagatcccggtgtcggtttccctggaccccagggacaa
cctgggggtccaggaccagaaggggacagtggacttccaggtccccaaggtccagagggc
cccgaggggcaaccgggtccaaaaggtgaggctggcgttccaggtgctccaggaatccct
ggctactccagtggtggatcatccaggagttcccctggagctccaggtccacctggacct
cccggccgcgatgggccacctgggtctgggtctggaacaccggacgtccgccaatacatc
acagaatacctcaagagcgatggtgtcagggagtacatgtcgggacctccgggtcctccg
ggtgtaccggggccccctggtggtggatcagtggagtccgtggacgaccttgctagtcgc
gtcatcgcatacatccagagtggaggtattgctagtggggtgcctggacctccaggccca
cctggcgctcccggtggaggcagcacatcgctaaatgacatcatcagccttctacagagg
gaggaagtgcgacgctacgtcatcggtcctcctggccctgctggacctcctggcatccca
gggatcccatggagaggaggctatggctttaatacccatgaggtggctggacgggtcctc
actctaatgaatgagcagggtatggtgggcatgctcggatcccctggacctcccggccca
ccaggcctacctgggtcctacagtgacatctcttatcttctgcaaaatactgaatacaga
ggcgtcttgggcgctcaggggcctcctggtccacctggtgtcccaggccctgctggccct
caaggccctgccggtccttcaggacaggccccctacagcagctctggatacaggctggag
gaggtcaaggactacatacagagtgatggtataagagggggaatgtttgggcttccaggc
cccccaggtccccctggatcccagggacacaagggagagcagggtagctctgggtacggc
cacgccttcgaccacaggaccagcgagggaagaaggctggttgagactgagacagactac
tccaatatagcggtccgagtgactgactacatcaagtaccatggtctgttgagggacgtt
gttgagaaccggtctcagctggagaagtcacaggttgttcaaggacccccaggaccccct
ggccctcccggggcgccaggatttagccgtgtgtttggttcccatagtaacgccacggac
cttgtggaatacatcagagcccatggaaacattgtgggaccccctggaaggccaggacag
aaanggggacatacaggtcataaaggcgagagaggactagatggaatcccaggaaggaca
ggcctccctggtctggagtggaaaagggggggggaacacacactcgtgacacacagaagg
aggaggaatgttggtgtttga
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