Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424616
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Entry
139424616 CDS
T10872
Name
(RefSeq) nuclear pore complex protein Nup133-like
KO
K14300
nuclear pore complex protein Nup133
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139424616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139424616
03036 Chromosome and associated proteins [BR:
ocla03036
]
139424616
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139424616
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139424616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
CHASE3
Motif
Other DBs
NCBI-GeneID:
139424616
NCBI-ProteinID:
XP_071032727
LinkDB
All DBs
Position
13:21631291..21643842
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AA seq
1140 aa
AA seq
DB search
MFSPRSTPSSGRRQSSRGTGRKSLAGTPTGLLFSPRRTSLAARSTPTRVQSYSTSDALHF
DVQTFGSSLPVKVMEALTMADADDQISVKVDESGWAWMVCGERLIIWKICQTAVAKLSVC
KGLQLPTSEFAYYADLVSISSPSPLETASVQSISVMAVAPEGTARFWPSLAHEGNYTETV
VDMGENLCNFVVAVRGGSFIVSSYKGQMMRLGADPSGKLQQRALQQGQGVLSGIGRRVSS
LFGMRAPLTNNNLHSVLWVGETGCLYTLTSCGLSKWEVDEVTEHQVLSWDSSRALTESVA
DAIWGSESNYEEIKEGVNVTYMDMQLSQDGLVVLAAAWHPSDSPCLAYFCLVTLLDNGNN
ISDELSVEVTKYNPPFQSEDALQAMRLMLPRASSPAAFLYNEELVFACSTGTGRGGLPEE
KIPFNTPGDRLRGGGCCANLPVFFSQNSGLVAVVARESASMLPETMEDSLCFSLAGAGPE
ATAMETPTRMEPVAQEDKTKLLKAAFLQFCRNDLVGAQTMTDELFPPEGDGDGEVGGELD
LVVTRINLDLVDDYPASDPRWAESVPDESAGFPLTSLIILHQLEDKMKAHGCFMDFLLQV
GLLDRLGQTAVRSSPMATRLLLCEHAEKLQAAMTLKNHHAKHGELVNRAILIALRKSNAT
VSTSLTAADVFFREVSQISSVFECLLEEEERTLKENPVDSVKWAEVVLSVNTIIKDMLQA
AGQYRDTKASLYRASESTPAEPEYIPWTASSGLGGVRTVIVRQHEVILRDVYPHADSELR
NGLNEQLAALLDVLLGGYVAQLTSLRPGRPGQQDRYNTLEMEYTQRRSELLAPLLELGQY
QWVAALAEKYCDFDILVQMCEQTDNQNRLQHYMAKFADQNFADFLFRWYMEKGKRGKLLS
QPIAQHQQLASFLQSHEHLSWLHHIHVHDFSSAYKTLYGQANMETRYFVKKKTLLALSKL
TALASDMPEAVMKKHVDDMVEQERFLLHQETLPKQLLEEKQQNPDTMPLLSAHNLINLYI
CDDNRRANEYDFKKALDLLEYIDEEDAVDIEGLKCEIFCKALKKDDWLSADGNDDPLEAA
KDSIFVKILLKLIQEGVPLQTYLPDVKDLLQLDEMEALKSKPTFEFVLRANYEHYLQAQI
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtttagccctcgttctacccctagttcaggccgaaggcagtcctcaagaggcaccggt
agaaagagtctcgccggtacacctacagggcttctcttttccccacgtaggacgtcgtta
gcagcgagatcaactcccacgcgtgtccagagctactcaacttcagacgcactccacttc
gatgtccagacgtttggctcttctctacctgtcaaagtcatggaggctttgacaatggct
gatgccgatgaccagatctctgtgaaggtggatgagagtggctgggcctggatggtgtgt
ggagagagactgatcatctggaagatctgccagactgctgttgcaaagttgtcagtatgt
aagggcctccagctgcctactagtgagtttgcctactatgctgatctcgtctccatatca
tctcccagccctctggagactgccagtgttcagtctatctctgtcatggcggtggctcca
gagggaacagcccggttctggcccagtttggcccacgaggggaattacactgagactgtg
gtcgacatgggcgaaaacctctgcaactttgttgtggctgttagggggggtagtttcatc
gtgtcatcctacaagggccagatgatgcgcctcggggcggacccctccggaaagctgcag
cagagggcgctacagcagggccagggggtgctctccggcatcggacgccgcgtctccagc
ctgtttggcatgcgcgccccgctcaccaacaacaatctccacagtgttctgtgggtgggc
gagacgggctgcctgtatactctgacctcctgtgggctcagtaaatgggaggtggatgag
gtcacagagcaccaggtcctcagctgggactccagccgcgctctaacggagagtgtcgcc
gacgccatctgggggtcagagagcaactatgaggaaatcaaggaaggagtgaacgttacc
tacatggacatgcaactgagccaggatggcctggtagtgttggcggcagcctggcacccc
tcagactccccctgcctggcctacttctgcctggtcaccctgctggacaacggcaacaac
atctctgatgagctctctgtggaggtcaccaagtacaacccccccttccagagtgaggat
gctctccaggccatgaggctgatgttaccacgggcctccagccctgctgccttcctgtac
aacgaggagctggtgtttgcctgctccaccggtaccggcagaggaggtctacctgaggag
aagatccccttcaacacacctggtgaccgtctgcgtggtgggggctgctgtgccaacctg
ccagtgttcttctcccagaacagtggtctggtggccgtggtggccagagagagtgcctcc
atgctgcctgagaccatggaggactccctctgcttctccctggctggggccggccctgag
gcaactgctatggagactccgactaggatggagcctgtagcgcaagaggacaaaaccaaa
ctcctaaaagcagcgtttctgcagttctgccggaatgacctggtgggggcccagaccatg
acagacgagctgttccccccggagggggacggagacggggaggtgggcggggagctggac
ctggtggtgacccggatcaacctggacctggtggatgactacccagcctcagacccccgc
tgggccgagtctgtccctgacgagagtgctggcttccccctgacctccctcatcatcctc
caccagctagaggacaagatgaaggcccacggctgcttcatggacttcctgctacaggtg
ggtctcctggaccggctgggccagaccgcggtgcgctcgtctcccatggcgacgcgcctg
ttgctgtgcgagcacgccgagaagctacaggcggccatgacgctgaagaaccaccacgcc
aagcacggcgagctggtcaatcgtgccatcctcattgccttgaggaagagcaacgcaacc
gtatccaccagcctcacggccgcagacgtcttcttcagagaggtgtctcagatctcctca
gtctttgagtgtctactagaagaggaggagaggactttgaaggagaaccctgtggactct
gtgaagtgggctgaagtggtgctcagtgtcaacaccatcatcaaggacatgctgcaggct
gctggtcagtacagagacaccaaggcctcactgtacagagcctcagagagcacccctgct
gagccagaatacatcccatggaccgcctctagcggtctgggaggggttcgcaccgtcatc
gtccgccagcacgaggtgatcctgcgtgacgtgtaccctcacgccgactcggagctgcgc
aatggcctgaacgagcagctggcagcgctgctggacgtgctcctgggaggctacgttgcc
cagctgacctcactgagaccgggccgtccgggccagcaggaccgctacaacaccctggag
atggagtacacgcagcgccgctctgaactgctcgcaccactgttggaactgggtcagtac
cagtgggtggcggcactggcagagaagtactgtgactttgacatcctggtccagatgtgt
gagcagactgacaaccaaaacagactgcagcactacatggccaagttcgccgaccagaac
tttgcggacttcctgttccgctggtacatggagaaggggaagaggggcaagctgctctcc
cagcccatcgcccagcaccagcagctggccagcttcctgcagtcccacgaacacctcagc
tggctgcaccacatccacgtccatgacttcagcagtgcttacaaaaccctgtatggccag
gccaacatggagacacgttactttgtgaagaagaagaccctgttggctctcagtaaactg
actgccctggcatcagacatgcctgaggctgtgatgaagaaacatgtagacgacatggta
gagcaggagcggttcctgctgcaccaggagactctgcccaaacagctgctggaggagaaa
caacagaaccccgacaccatgcccctgctcagcgctcacaaccttattaatctgtatatt
tgtgatgacaaccgacgagccaatgagtatgacttcaagaaggctctggatctactggag
tacatagacgaggaggacgctgtggacattgagggactcaagtgtgagatcttctgcaag
gccctcaagaaagacgactggttgtctgctgatgggaacgatgaccctctggaggcagcc
aaggacagcatctttgtcaagatcctcctcaagctcatacaagaaggtgttcctctacag
acctaccttcctgacgtcaaagaccttcttcagctggacgagatggaggctttgaaatca
aagcccacttttgagtttgtactgcgggccaactatgaacattacctgcaagcacagatc
tga
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