Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424732
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Entry
139424732 CDS
T10872
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139424732
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139424732
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139424732
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139424732
Intermediate filaments
Intermediate filament-binding proteins
139424732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
139424732
NCBI-ProteinID:
XP_071032941
LinkDB
All DBs
Position
13:27028268..27112127
Genome browser
AA seq
2379 aa
AA seq
DB search
MTTVAAEYEHMEITQQYSSSDTVNSRWDDEWDNENGSARLFERSRIKALADVQFTEPDSG
FPAQVAFNYNMLEGRFKQLQDEREAVQKKTFTKWVNSHLSRVSCRITDLYRDLSDGRMLI
KLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGL
IWTIILRFQIQDISVETDGDNKEKRSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAF
NALIHKHRPDLIDFDKLKKSNANHNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSVIT
YVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIIILNNR
KFANSLNGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPREGKL
ISDINKTWERLEKAEHERELSLRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQD
NFGFDLPAVDAATKKHEAIETDITAYEERVQAVVSVAKELEAEKYHDIKRIAARKDNVIR
LWEYLLELLKSRRQRLEMNLGLQRVFQEMLYIMDWMDEMKMMLLSQDYGKHLLGVEDLLQ
KHALVEADIGIQADRVKAVNNNAQKFAIDGDAYKPCDPQVIRDRVAHMEFCYQELTQLAA
ERRARLEESHRLWKFFWEMAEEEGWIHEKEQILSSDESGKDLTGTVRLLSQHRTLEDEMS
GRAGHLQHTITEGQAMADGGHFGAAKIRERITNLRAQWAALEELAAVRKAHLEEAYAQHQ
FQVDADDADAWTLDALRIVSSGEVGHDEFSTQALVRKHKDAAAEVASYRPVIDALHEQAG
ALPEAQVQSEQVKGRLAGIEERYKEVAELTRFRKQALQDALALYKMFSEADACEMWIDEK
EQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQASRVAVVNQIARQLMHNGHPSEKNIKA
QQDKLNNRWSQFRDLADQKKESLISALGVQNYHLDCNETKSWIREKTKVIESTQELGNDL
TGVMALQRKLTGMERDLAAIEDKLGDLRGEAERLPGEHPDQAKAIKGRLAEITAVWEEMK
ATLRNREESLGEASKLQQFLRELDDFQSWLSRTQTAVASEETPNTLAEAEKLLAQHEGIK
NEIRNYEEDYQKMRDMGVMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQS
HAYQLFLRDTTQAEAFLNNQEYMLAHTEMATTLEGAEGAIKKQEDFMTTMDANEEKINSV
VEAGRRLASDGNINADRIQERAASIDDRHKKNRKAALELLMRLKDNRDLQKFLQDSQELS
LWINEKMLTAQDMSYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLVLEKPETE
SVVKEKLSALQKMWEVLESTTQTKAQCLFDANKTELFTQSCADLDKWLGGLEGQIQSDDY
GKDLTSVNILLKKQQILENQVEVRQREVVELQSQALVLSQEGNVTEEVDCQRQMVEHKFK
ELLDPLRKRKNFLVASREIHQFNRDVEDEILWVEERMPIATSTEHGHNLQTVQLLIKKNQ
TLQKEIQGHQPRFDDIFERSESLLIEDSLAVEAIRQHLADLQQLWGLMIEETEKRHTRLE
QSHNAQKYYFDAAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQIVEQSVEDYAETVH
QLSKTSRGLTAAGHTESERIGMRQSQVDKLYAGMKDLSEERRGKLDERFRLFQLNREVDD
LEQWIAEREVVAGSHELGQDYEHVTMLQERFREFSRDTGNIGQERVDAVNRLSDELINAG
HADAATVAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEILGRIMDKHKKLP
EEVGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAVRLQSAYAGDKADDIQRRESEV
LEAWNTLLESCDVRRGHLLDTGDKFNFFSMVRDLMLWMEAVIRLIEAQENPRDVSSVELL
MNNHQGIKAEIDARNDSFTACIELGKSLLARKHYASEEIKDKLLQLMDKRKDMIDKWEDR
REWLRLILEVHQFGRDAGVAEAWLLGQEPYLFGPELGQSVDEVEKLIKRHEAFEKSAATW
EERFSALERLTTLELLEVRRQQEEERMRKPPSPEPLPAQDSPRQSGVENGLQNGLASDQD
SPQNGLDRVEIMNGVAEQNSKDPSPIPSPTADRRVKGSLSSTLPTQNHDSPVAQLEGFLH
RKHEWEGHNKKASSRSWHNVYCVINNQEMGFYKDNKGAGQGIPYHNAIPISLMGAVCDVA
MDYKKKKHVFKLRVADGNEYLFQAKEEEEMSTWIQAILNAGTPDKVSITPSNQSTPASSR
AQTLPATVTLTTESSPGKREKDKEKDKEKRFSLFGKKKL
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgcggaatatgaacacatggagatcacgcagcagtacagtagcagc
gacacggtcaacagccgctgggatgacgagtgggataatgagaacggctcggctcgcctg
ttcgagcgctcgcgcatcaaggccctggcagatgtacaattcacagagccggactctggt
ttccctgctcaggtggctttcaactacaacatgttagaagggcgctttaaacagcttcaa
gatgagcgcgaagcggtgcagaagaagaccttcaccaaatgggtgaactctcacctctcc
cgggtgtcctgccgcatcacggacctgtacagggacctgagtgatggacgcatgctcatc
aaactgctggaggtgctgtctggggagagactgcctaagcccaccaggggacggatgcgt
atccactgcctggagaatgtggacaaggccctgcagttcctcaaggagcagagggtccac
ctggaaaacatgggctcgcatgacatcgttgacggcaaccaccgcctcaccctgggcctc
atctggaccatcattctcaggttccagatccaggacattagcgttgagactgatggagac
aacaaggagaagagatcagccaaggatgccctgctcctctggtgccagatgaagactgct
ggctatccaaacgtgaacattcacaacttcagcaccagttggcgagacggcatggcattc
aatgccctcatccataagcacaggccagacctgattgactttgacaagctgaaaaagtct
aatgccaaccacaacctgcagaatgccttcaatttggctgagcagcatctggggcttacc
aagctcctggacccagaggatatcagtgtggaccaccccgatgagaagtctgtcatcaca
tacgtggtgacatactaccactacttctccaaaatgaaggccctgaaagtcgaggggaaa
cgtattgggaaggtactggacaatgccattgagacagagaagatgattgagaagtacgag
tctctggcctcagacctgctggagtggatcgagcagaccatcatcatcctcaacaatcgc
aagtttgccaactctttaaacggggtgcagcagcagcttcaagccttcaacacatatcgc
acggttgagaaaccccctaagtttactgagaagggcaacctggaggtgcttctgtttacc
atccagagcaagatgagggctaacaatcagaaagtctacatgcccagggagggcaaactc
atctctgacattaacaagacctgggagagactggagaaggcggagcatgagcgggagctg
tctctgaggacagagctgattcgacaggagaaactggagcagctggctcgccgctttgac
cgcaaggctgccatgagggagacctggttgagtgagaaccagcgcctcgtctcacaggac
aactttggctttgaccttccagcggtggacgcggccaccaagaagcatgaggccatcgag
actgatattacagcttacgaggagcgtgtgcaggccgtggtgtccgtcgctaaggagctg
gaggcagagaaataccacgacatcaaacgaatcgcagcacgcaaggacaatgtgatccgg
ctgtgggagtacctgctggagcttctgaagtcgaggcgccagcgcctggagatgaacttg
ggtctgcagagggtcttccaggagatgctttacatcatggactggatggacgagatgaag
atgatgctactgtcccaggactatgggaagcatctgctcggagtggaggatctcttgcag
aaacatgccctggtggaggctgacatcggcatccaggccgaccgagtcaaagctgtcaac
aacaatgctcagaagtttgccatcgatggcgatgcttacaagccctgtgaccctcaggta
atacgcgaccgcgtggcacacatggagttctgctatcaggaactgacccagctggctgcc
gagcgacgggcccgcctggaggagtctcaccgcctctggaagttcttctgggagatggcc
gaggaggagggctggatccatgagaaggagcagatcctgtcgtcggacgagagcggcaag
gacctgacgggcactgtgcgcctgctaagccagcaccgcaccctggaggacgagatgagt
ggccgtgcaggtcacctgcagcacaccattactgagggccaggccatggccgacggcggc
cacttcggcgctgccaagatccgtgaacgcatcaccaacctgcgggcgcagtgggcagcg
ttggaggagctggcggccgtgaggaaggcccatctggaggaagcgtatgcccagcaccag
ttccaggtggatgcagatgacgccgacgcctggaccctggatgccctacgcatcgtgtcc
agtggcgaggtgggccatgacgagttctccacacaggccctggtgcgcaaacacaaggac
gccgccgccgaggtggccagctatcggccggtgatagatgcgctccatgagcaggcgggc
gccttgcctgaggcgcaggtccagtcggaacaggtcaagggccgtttggcaggcatagag
gagcgttacaaggaggtggccgagctgacccggtttagaaagcaggcactgcaggacgcc
ctggccctctacaagatgttcagcgaggcggacgcctgcgagatgtggatcgatgagaag
gagcagtggctcaacagtatggagatcccagagaagctggaagacctagaggtcatacag
cacaggttcgagagcctggagcctgagatgaacaaccaggcatcacgcgtcgctgttgtg
aaccagatcgccaggcagctgatgcacaatggacaccccagtgagaagaacatcaaagcc
cagcaagataagctcaacaacagatggagccagttccgggatctggcagaccagaagaag
gagtctctaatctcggcgctgggtgtgcagaactaccacctggactgcaacgaaactaag
tcatggatccgcgagaagacgaaggtcatcgagtccacccaggagctgggcaacgacctg
acaggtgtcatggcgctgcagcgtaaactcactggcatggagcgtgacctggctgccatc
gaggacaagctgggcgacctgcgcggcgaggcagagcggctgcccggcgagcacccggac
caggccaaggccatcaagggccgcctggccgagatcactgccgtgtgggaggagatgaag
gccacactgcgtaatcgcgaggagtcccttggagaggccagcaagctgcagcagttcctg
cgcgagctggatgacttccagtcgtggctgtcgcgcacacagacagccgtcgcctctgag
gagacgcccaacacgctggccgaggcagagaagctgctagcgcagcacgagggcatcaag
aacgagatccgcaactacgaggaggactaccagaagatgcgcgacatgggcgtgatggtg
acccagggccagaccgatgcccagtacatgttcctgaggcagcggttacaggccctggac
acgggctggaatgagctgcacaagatgtgggaaaaccggcagaacctgctgtcccagtcc
cacgcctaccaactgtttctcagggacaccacgcaggccgaggccttcctcaacaaccag
gaatacatgctggcccatacagagatggccacaacgcttgagggggccgaaggagccatc
aagaagcaggaggacttcatgaccacaatggacgccaacgaagagaagatcaacagtgtg
gtggaggctggcaggcggctggcgagtgatggcaacatcaacgccgaccgcatccaggag
agagcagcgtctattgacgacagacataagaagaaccgcaaggctgctctggagctactg
atgaggctgaaggataaccgggaccttcagaagttcctacaggattcccaggagctgtcc
ctgtggatcaatgagaagatgctcacggcccaggacatgtcgtacgacgaggccaggaac
ctccacagcaaatggctcaagcatcaggccttcatggccgagctgcagtccaacaaggag
tggctggacaaaattgagaaggatgggatgcagctggtgttagagaagcctgagacagag
tcggtggtcaaggagaagctctcagccctccagaagatgtgggaagtgttggagtctacc
acccagaccaaagcccagtgcctgtttgacgccaacaagaccgagctgttcacacagagc
tgtgctgacttggacaagtggctgggtggcctggagggacagattcaatctgatgactat
ggcaaagacctgaccagcgtcaatatcctgctcaaaaagcagcagatattggagaatcag
gtggaggtccgtcagagggaggtggtggagctgcagagccaggcactggtcctcagccag
gaagggaatgtcacagaggaggtggattgccagagacagatggtggagcacaagttcaaa
gagctgctcgacccgctgaggaagagaaagaacttcctggtggcctcccgtgagatccac
cagttcaaccgcgacgtggaggatgagatactttgggtcgaagagaggatgccaattgca
acctccacagagcatggtcacaacctgcagaccgttcaactgcttatcaagaaaaatcag
accttgcagaaggagatccagggacaccagccccgcttcgacgacattttcgagcggagc
gagagcctgctgatagaggacagccttgccgtggaggccatccgccagcacctggctgac
ctgcaacagctgtggggtctgatgattgaggagacagagaagcgtcacacccgactggag
cagtcccacaacgcccagaagtactactttgatgccgccgaggcagaggcctggatgagc
gagcaggagttgtacatgatgtctgaggagaaagccaaggatgagcagagttctgtagcc
atgctaaagaagcaccagattgtggaacaatcggtggaggactacgctgagacagtccat
cagctctccaagaccagcagaggcctgacagctgcaggacatacagagagtgagaggata
ggcatgcgtcagtctcaggtggacaagctctatgccggcatgaaggacctgtctgaggag
aggcggggcaaactggatgagaggttccgcctgttccagctcaaccgcgaggttgacgac
ttggagcagtggattgccgagcgggaggtggtggccggatctcacgagctgggacaagac
tacgagcatgtcactatgctccaggagcgcttccgggagttttcccgtgacacaggcaac
atcggccaggagcgtgtggatgccgtcaaccgcctgtccgacgagctgattaatgcgggc
cacgcagatgccgccacggtggctgagtggaaggacggcctcaacgaggcctgggctgac
ctgctggagctcatcgacacgcgcacgcagatactggccgcctcttacgagctacacaag
ttctaccacgacgccaaggagatcctgggccgcatcatggacaaacacaagaagcttccc
gaggaggtgggacgtgaccagaacacggtggagacactgcagcggatgcacaccaccttc
gagcacgacatccaggccctaggaacacaggtgaggcagctgcaggaggatgccgtccgc
ctccagtcagcctacgccggcgacaaggcagacgacatccagcggagggagagcgaggtg
ctggaggcctggaataccctgctggagtcctgcgatgtccgcagaggccacctcctggac
acgggtgacaaatttaacttcttcagcatggtgcgcgatctcatgctgtggatggaggcc
gtcatccgtctcatcgaagcccaggagaatccaagggacgtgtcctctgtggagttgttg
atgaacaaccaccagggtatcaaggctgagatcgatgcccgcaatgacagcttcaccgcc
tgcattgagttgggcaagtctctgctagccagaaagcactatgcatcagaggagatcaaa
gataaattactacagctgatggacaagaggaaagacatgattgacaagtgggaggaccga
cgggagtggttaagactgattttggaagttcaccagtttgggagggatgcaggggtggca
gaggcgtggctgctgggacaggaaccatacctgtttggcccggagttggggcagagcgtg
gacgaagtggagaaactgatcaagaggcacgaggcttttgagaagtcggccgctacttgg
gaggagcgcttctcagcactggagaggttgactacgttggagttattggaagtgagaaga
cagcaagaggaagagagaatgcgaaaacccccttcgccggagcctttaccggcgcaggac
tcaccacggcagagtggagtagagaacggactgcagaacggactggcttcagaccaggat
tctccacagaacggcttggatagagttgagatcatgaatggagtggcggaacagaactca
aaggacccgagccccattccctcacccacagccgaccggcgggtcaagggcagcctgtcc
tccacgttgccgacccagaaccacgattcgcctgtggctcagctggagggcttcctgcat
cgcaagcatgaatgggagggacacaacaagaaggcctcaagcagatcatggcataacgtg
tactgcgttatcaacaatcaggaaatgggcttctacaaagacaacaagggtgctggtcaa
ggcatcccctaccataatgcgattccgatcagtctaatgggggctgtgtgtgatgtggcc
atggactacaaaaaaaagaagcatgtcttcaaactcagagttgctgatggaaatgagtat
ctcttccaagccaaagaagaggaggagatgagcacatggatccaggccattctgaacgcg
gggacacctgacaaggtatcgattacgcccagcaaccagagcactccggcgtcgagccga
gcccagaccctgcccgccactgtcaccctcaccaccgaatccagcccgggcaagcgggag
aaagacaaggaaaaggacaaggagaagcgattcagcctctttggcaagaaaaaactataa
DBGET
integrated database retrieval system
