Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139424733
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Entry
139424733 CDS
T10872
Name
(RefSeq) protein jagged-1b-like isoform X1
KO
K06052
jagged-1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04330
Notch signaling pathway
ocla04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139424733
04371 Apelin signaling pathway
139424733
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ocla04090
]
139424733
CD molecules [BR:
ocla04090
]
Proteins
139424733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
MNNL
EGF_TEN
JAG1
DSL
EGF_2
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
EGF_CA
EGF_3
CD34_antigen
DAG1
Motif
Other DBs
NCBI-GeneID:
139424733
NCBI-ProteinID:
XP_071032942
LinkDB
All DBs
Position
13:complement(27135936..27173675)
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AA seq
1247 aa
AA seq
DB search
MILRPSSSCAAFSIHVFLQCMWIKVAVASGHFELQIVSMQNVNGELQTGVCCDGSRNAVD
RRCTRDECDTYFKVCLKEYQLKVSSAGPCSFGTASTPVVGGNTFSLRNTRSDKSRIVLPF
SFAWPRSYTLIVEALDFNNDSSTGSGGGERIEKAVQSGMINPGRQWQSLKHNGPVGQFEY
QIRVSCDEHYYGFGCNKFCRPRNDFFGHYNCDHNGNKTCLEGWSGPECSTAICRQGCSTE
HGSCKLPGDCKCLYGWQGEYCDKCIPHPGCVHGSCVEPWQCLCDTNFGGQLCDKDLNTCG
TFQPCLNMGTCSNTGPDKYHCACPDGYSGVNCEKAEHACLSEPCFNGGSCLETSQGFECQ
CAPGWSGPSCSINVDECVPNPCGHGGTCQDQVNGFKCTCPFQWSGKTCLIDANECEGDPC
LNANSCRNLIGGYFCECLPGWMGQNCDTNINDCRDQCQNGGTCKDMVNGYRCVCPSGFGG
EHCEKDVDECASGPCLNGGRCKDDVNGFQCLCLPGFSGNFCQLDIDYCMPNPCQNGAQCF
NLATDYFCKCPEDYEGKNCSHLKDHCRTTPCKVIDSCTVAVASNSTPGGMRLISSNVCGP
HGRCRSQAGGQFSCECQEGFTGTYCHENINDCESGPCQNGGTCIDKVSLYQCICAEGWEG
PNCDNNIDDCNTNPCRNRGTCRDLVNDFYCECKNGWKGKTCHSRESQCDEATCNNGGTCY
DEGDTFKCMCAAGWEGSTCNIAKNSSCLPSPCENGGTCVVSGDSFTCVCKEGWEGLTCNQ
NSNDCNPHPCYNSGTCVDGDNWYRCECAAGFAGPDCRININECQSSPCAFGSTCVDEING
YRCLCPPGRAGPRCQEVAGRPCVVSGLVAVDGTKWDDDCNTCQCHNGKVTCTMIWCGPKS
CRVHSKSHSGGECPVGQMCVPVRDECCFVKPCPSQGECWSASHSPKPHAKCHPESNCANV
TFTFNKDTMPQGLTVENICSELRSLYVVRNLSSEYSVSMTCEPSATANNEIHVAISTEDP
RRGKAPIKEITDKFIDLVSKRNGNSTITTAVIEVRVQRRQSHNPNADYLVPLLVSVVIVI
WLLAVVSAFIWCLKRRRKPSTHTGVNTQSSSPATTAEDTNNAVNNVREQLNQIKNPIDKH
GLTNGLPPVKEHPNHHHYHYEDKNSLINAKIRTNNSDVGSHHSDDEESEKRFQKARFPRH
TPYTLVDREERSPQPLRTAGKHPNWINKQDNRDLESAQSLNRMEFIV
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgattttgagaccgagttcaagctgtgctgctttttctattcatgtcttcttgcaatgc
atgtggattaaggtggctgtggcatcaggacacttcgaattgcaaattgtgtcgatgcag
aacgtgaatggcgaactgcagactggtgtgtgctgcgatggatctcggaatgccgtagat
cgcagatgcacgagggacgagtgtgatacctattttaaagtgtgtctaaaggagtaccag
ttgaaggtctcttccgcgggcccatgcagtttcgggacggcttcaacacccgtggtcgga
gggaatactttttctttgcggaacacgaggagtgacaagtcgaggattgtgttacctttc
agcttcgcttggccgaggtcctatacgttgatcgtggaggccttggacttcaacaatgac
tcttctacgggcagcggcggaggcgagaggatcgagaaggctgttcagtcgggcatgatc
aaccccggccgccagtggcagagcctgaagcacaacggcccggtgggccagttcgagtac
cagattcgggtcagctgcgacgagcactactatggtttcggctgcaacaagttctgccgt
ccgcgcaacgacttttttggccactacaactgcgaccacaacggcaacaagacctgcctc
gaagggtggtctggaccagaatgcagcactgctatttgcaggcaaggctgcagcactgaa
cacggttcctgtaaattgcccggagattgcaagtgtctgtacggctggcagggcgagtac
tgtgataagtgcatccctcacccgggctgtgtgcatggaagctgcgtggaaccgtggcag
tgcctctgtgacacaaactttggcggccagctctgcgacaaagacctgaacacatgtggt
acgttccagccctgtctgaacatggggacctgcagcaacactggacctgacaagtaccac
tgtgcctgtcctgacggctactctggtgtcaactgcgagaaagcagagcatgcctgtctg
tcggagccctgttttaacggagggagctgtttggagaccagtcagggcttcgagtgccag
tgtgcccccggctggagtggcccctcctgcagcatcaatgtggacgagtgtgtccccaac
ccctgtggccacgggggcacttgccaggaccaggtcaacggcttcaagtgcacctgtcct
ttccagtggagcggcaagacctgcctcatcgacgccaatgagtgcgaaggcgacccctgc
ctgaatgccaactcctgccggaacctgattggagggtacttctgcgagtgcctccctggt
tggatgggccagaactgcgacaccaatattaatgactgccgggaccagtgtcaaaatggg
ggaacctgcaaggacatggtgaacgggtaccgctgtgtttgtccgtcgggcttcggcggt
gagcactgcgagaaggatgtagatgagtgtgccagtggcccgtgcctgaacggcggccgt
tgcaaggacgacgtcaacggcttccagtgcctgtgcctgcccggtttctctggcaacttc
tgtcagctggatatcgactactgcatgccgaacccatgtcaaaacggggcccagtgtttc
aacctggctactgactacttctgcaaatgtcccgaagactatgagggcaagaactgttcc
catttgaaggaccactgtcgtaccacaccctgcaaagtgattgacagctgcacggttgcc
gtggcatccaacagcacccctgggggcatgcgtctgatttcgtccaatgtgtgcgggccc
cacgggcgctgccggagccaggctgggggccagttcagctgcgagtgccaggagggcttc
actgggacatactgccatgagaatataaatgactgtgaaagcggcccgtgtcagaacggg
ggaacgtgtattgacaaagtcagcctgtaccagtgcatctgtgccgagggttgggaggga
cccaactgcgacaacaacattgacgactgcaacaccaacccctgtcgtaaccgcggcacg
tgccgggacctggtgaacgacttctactgtgagtgtaagaacggatggaagggcaagaca
tgtcactcaagggagagccagtgtgacgaggcgacatgcaacaatggcggaacgtgctac
gatgaaggggacaccttcaaatgcatgtgtgccgccggatgggagggttccacctgtaat
atagctaagaacagcagctgtctgcctagcccttgtgagaacggaggcacctgtgtggtc
agtggagactctttcacctgtgtctgcaaagagggctgggagggcctgacctgcaaccaa
aattccaacgactgcaatcctcacccttgctataacagtggaacctgtgtggacggagat
aactggtaccggtgtgagtgtgccgcaggattcgcaggaccagactgcaggattaacatc
aacgagtgccagtcgtcgccttgtgcgttcggctccacctgcgtagatgagatcaacggc
taccgctgcctgtgtccaccagggagggccggccccagatgccaagaagttgctgggaga
ccctgtgttgtcagtggtctggtggccgtggacgggaccaaatgggacgacgattgcaac
acctgccagtgccacaatgggaaggtcacctgtacaatgatctggtgcggtcccaaatcc
tgccgggtccacagtaaaagccacagtggtggcgagtgcccggtcggtcagatgtgtgtg
cccgttcgggacgagtgctgttttgtcaaaccatgccccagccagggcgagtgctggtcg
gcctcccacagtcccaagccccacgcaaagtgccaccccgagagcaactgtgccaatgtc
accttcaccttcaacaaggacaccatgccacagggcttgactgttgagaacatctgcagc
gagctaaggagtctgtatgtggtgaggaacctctcgtcagagtactcggtgtccatgaca
tgcgagccatcggccacagccaacaacgagatccatgtagccatctcgacggaggacccc
agaagaggcaaggcccctatcaaggaaatcacggacaagttcatagacctggtcagcaag
cgaaacggcaacagcactatcaccacagccgtcatcgaggtccgcgtccagaggaggcag
agccacaaccccaatgcagactacctggtccccctgctggtgtccgtagtcatcgtcatc
tggctcctggctgtggtctctgcttttatctggtgcctcaagcggcgccgaaagcccagc
acccacacgggtgtcaacacccagtcgtcgtccccagcgacgacagccgaagacaccaac
aacgcagtcaacaacgtgcgcgagcagctcaaccagatcaagaatcccatcgataaacac
ggtctgaccaatggcctacccccagttaaagaacaccccaaccaccaccactatcactat
gaggacaagaactctcttatcaatgccaaaattagaacaaacaactctgacgtgggtagc
caccattcggatgacgaggagtctgagaagaggtttcagaaggctaggttcccaaggcat
acgccatatacgttagtggaccgggaggagcggagcccacagccgctccgcacggccggc
aaacaccccaactggattaacaaacaggacaacagagacttggagtcggcgcagagctta
aaccgaatggaattcattgtatag
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