Oceanisphaera avium: CBP12_02100
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Entry
CBP12_02100 CDS
T04855
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ocm
Oceanisphaera avium
Pathway
ocm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBP12_02100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_02100
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP12_02100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBP12_02100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UB2H
UVR
AAA_30
Kinesin
AAA_22
DUF87
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ART79085
UniProt:
A0A1Y0CW29
LinkDB
All DBs
Position
453067..455064
Genome browser
AA seq
665 aa
AA seq
DB search
MSKEFQLVSPYQAAGDQPTAIAQLLEGIEAGLAHQTLLGVTGSGKTFTMANVIATLNRPT
MILAPNKTLAAQLYGEMKEFFPHNSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIE
QMRLSATKALMERRDVIIVASVSAIYGLGDPQSYLSMMLHLRVGEQLKQRDMLRRLAELQ
YQRNDAGFQRGTFRVRGEVIDIFPAESDNQAVRVELFDDEIERLSLFDPLTGGVSQSLAR
FTIYPKTHYVTPREKLLSAVEHIKVELQARKAQLLSANKLIEEQRISQRTQFDIEMIQEL
GYCSGIENYSRYLSGRGEGEAPPTLFDYLPADGLLIIDESHVTVPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFDEFEALMPQTVFVSATPSAYELEKSGDDVAEQVVRPTGLLD
PIIEVRPVATQVDDVLSEARLRIANNERILVTTLTKRMAEDLSEYLADHGLKVRYLHSDI
DTVERMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDKITRSMAAAISETERRRALQQAFNEEHGITPQGLNKAVTDVLDLD
GTKRIGSKRAKELSPPAPILSAKELDKQITELEKVMVSHAQNLEFEQAAATRDRIHALRE
QLIRS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaattccagctagtcagcccttatcaagcggcgggtgatcaacccactgcc
attgcccaattactggaagggattgaagctggtctcgctcatcaaactttattgggcgtc
accggctctggcaagacatttaccatggcaaacgtgattgccacgcttaatagaccgacc
atgatattagcgccaaataaaacgcttgcggcgcaattatatggagaaatgaaagagttt
tttcctcataactcagtggaatatttcgtctcctattatgattattaccagcctgaagcc
tatgttcctaccacagatacctttatcgaaaaagatgcctctattaacgatcatattgag
cagatgcgcttgtcggccactaaagcgctgatggagcgacgagacgttattattgtggcg
tcagtgtcagctatttatgggttaggggatccgcagtcttatttgagcatgatgttgcat
ttgcgggtgggagagcagttaaagcaaagagatatgttgcgccgcttagcggagctgcaa
tatcagcgtaacgatgccggttttcagcgcggtacctttagagtaagaggggaggtgatt
gatatctttcctgccgagtcagataaccaagccgttagagtcgagttatttgatgatgaa
attgagcggttaagcttatttgatccattgaccgggggcgtttctcaatcgctggcgcgc
tttactatttaccctaaaacacactatgtgacaccgcgagaaaagctgctctcggccgtt
gagcacattaaagtggaattacaagcacgtaaagcacagttactcagtgccaataaactc
attgaagaacaacgtattagccagcgcactcagtttgatatcgaaatgatccaagagttg
gggtattgctcaggcattgaaaactattcccgctatctatcgggacgcggcgagggagaa
gcaccgcccaccttatttgattatttaccggccgatggcttgttaattattgatgagtct
cacgtgaccgtgccccaaattggcggcatgtataaaggcgatcgctctcgtaaagaaacc
ttagtggaatacggatttcgcctgccttccgcgcttgataaccgaccgatgcgctttgat
gaatttgaagccttaatgccgcaaacggtgtttgtttcggccacccccagtgcttatgag
ttagaaaaatcgggagacgatgtcgccgagcaagtcgtgcgccccaccggcttattagat
cccatcattgaggtgcgcccggtggccactcaagttgacgatgtattatctgaagcacgg
ctgcgtattgctaataacgagcgcatattagtgaccaccttgactaaacgcatggccgag
gatctgtctgaatatttagcagatcatggcctaaaggtgcgttacttacattcagatatt
gatactgtagagcgaatggagattattcgtgatctgcgcttgggcgtatttgatgtgctg
gtgggcattaacttattgcgtgaaggactcgatatgcccgaagtgtcgttagtggcgatt
ttagacgcggataaagaaggttttttacgctcggagcgctcacttattcaaaccataggg
cgtgcagcacgaaacttaaacggtaaagctattttatacggcgataaaattacccgctcg
atggcggcggcgataagtgaaactgaacgccgacgcgctttgcagcaagcgtttaatgaa
gagcatggcattactcctcaaggcttgaacaaagcggtgacggatgtactggacttagat
ggcaccaagcgtattggttctaagcgtgctaaagagctatctccgcctgcgccaatatta
agtgctaaagagctggataaacaaattacggagctagaaaaagtcatggtaagtcatgca
caaaaccttgaatttgaacaagccgccgccacacgcgatcgcattcatgcgctacgtgag
caactgatccgcagttaa
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