Oceanisphaera avium: CBP12_02830
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Entry
CBP12_02830 CDS
T04855
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ocm
Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocm03019
]
CBP12_02830
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBP12_02830
Messenger RNA biogenesis [BR:
ocm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBP12_02830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
SLFN-g3_helicase
AAA_22
nSTAND3
AAA_25
ResIII
AAA_30
HA2_N
ABC_tran
T2SSE
NACHT
FtsK_SpoIIIE
AAA_11
Cas3-like_C_2
NTPase_1
SRP54
AAA_24
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ART79212
UniProt:
A0A1Y0CV81
LinkDB
All DBs
Position
621872..625735
Genome browser
AA seq
1287 aa
AA seq
DB search
MTQSVEQWQAQLTKCRGSDRARLSARLRGAAKLAHPKQAQVLQKLGGDIQRSIIERQRRH
ALLATAIQYPIDLPVSEQRELIKSTIAEHQVVIIAGETGSGKTTQLPKMCLELGLGVEGT
IAHTQPRRLAARSVAARLAQELQCELGQRVGYKIRFNDQVSEHTQVKLMTDGILLAEIQQ
DRQLRQYDCIIIDEAHERSLNIDFIMGYLKQLLPKRPDLKVIITSATIDPERFAEHFNHA
PIISVSGRTYPVEVRYRPFEQDRDQQQAIVEAVAELSQVGNGDILIFLSGERDIRDTADT
LRKLQLRHTEVVPLYSRLSNAEQNKIFEPHSGRRIVLATNVAETSLTVPGIRYVIDPGTA
RISRYSYRTKVQRLPIEPISQASANQRMGRCGRVAAGVCIRLYSEDDFNNRPEFTDPEIL
RTNLASVIVQMLALGLGDIAAFPFVQAPERKFINDGIRLLEELGAVSVLQNKLALTPLGK
ELASLPVDPRLARMVLAARELGCVKEVMIIVAALSIQDPRERPQDKQQAAAEQHQRFADT
DSDFAAYINLWNYVKEQQALLSNNQFRKLCQKEFLNYLRLREWQDIYSQLRQVRDLGFSQ
NREPAISDNLHEALLSGLLSQVGMRDGDKRELLGARNTRFILAPNSKLAKKPPRWLMVAE
LMETHRLYGRIAAKIEPQWIERQGGHLLKAHYSEPHWSKKQGAVMAFVSLNLFGLPVVVR
RRVNYSQVDPTLCRELFIRHALVEGDVHTRHAFFHHNQALLSQAETLEHKSRRRDLVIDD
ETLFEFYDQKLPADIVSLRHFDKWWKSQAKDQVQLWHFNTEMLLNDSAKQVSATDYPDTW
HYDGVALALEYQFEPGLKEDGVTVTIPLPLLNQIQPQAFVWQVPGLRRELIIGLIKSLPK
PMRKHFVPAPNFADALLAAMPAQEGSLLVQMEKQLRRMTGVSVPEEQWDWSALAPHLLMR
FNIVDAKGETLAVGRDLAAIKLSLQGQVQTALSDALDEDRLEQTNLRDFPARTIPKTYEA
KRAGFAVKAYPALVDHQDSVALTLCEDEVTQAQTMWQGQSRLLLLQLPSPIKYLHEKLPN
KAKLGLYFNPYGRVLDLVDDCIRAGVEVLMRRYHAPAWSPDEFAILKDQVGGELNHTVAD
IALQVETLLSQSHEIKKRLKGKIDLSQAMAMTDIQAQLNNLIFKGFVTVTGGERLLEVSR
YLTAILRRLEKLPIDPNRDRLQLLKIQQVQDAYQALLNKQPKGQALPAEILEIRWMIEEL
RVSFFAQTLGTAYPISEKRILQQINNS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagtcggtggagcagtggcaagcacaattaacaaaatgtcgtggtagtgaccgt
gcgcgcttaagtgcgcgtttacggggagcggcaaaacttgctcaccctaagcaagcacaa
gtactgcaaaagctagggggcgatattcaacgctctattattgagcgccaacgccgccac
gcgttattagccaccgccatccaatatccgattgatttaccggtgagtgagcagcgagag
ttaattaaaagcactatcgctgagcatcaggtggtgatcattgcgggcgaaacaggctct
ggtaaaaccacgcaactgccaaaaatgtgcttagagctaggcttaggagtcgagggcacc
atagcccatactcagcccagacgactggctgctcgaagtgtggcggcgcgcttagcacaa
gagttacagtgtgagcttggccaacgagtgggttataaaattcgctttaatgaccaagtg
agtgagcatactcaagtcaaactgatgacggatggcatcttactggcagaaattcagcaa
gaccgacagttgcgtcaatatgactgcattattattgatgaagcgcatgagcgcagttta
aacatcgattttattatgggctacttaaagcaactgctgcctaagcgccccgatcttaaa
gtgattattacctcagcgaccatagatccagagcgctttgctgaacactttaatcacgct
cctattattagtgtctcagggcgcacttatccggtagaagtgcgctatcgcccctttgag
caagaccgcgatcaacaacaagccatagtggaagccgtcgccgagctcagccaagtgggt
aatggcgatattttaatttttttaagtggtgagcgtgatattcgtgacaccgctgatacc
ctgcgaaaactacagctgcgccataccgaagtggtacccttgtattcacgtttgtccaat
gccgagcaaaataaaatatttgaaccccactctgggcggcgcattgtactggctactaac
gtcgccgaaacttcattgacagtacccggtattcgctatgtcattgacccaggcacggcg
cgcattagtcgctactcttatcgtactaaagtacaacgcttgcctatagagccgatttct
caagccagtgctaatcaacgaatggggcgctgtgggcgcgtagcggcaggcgtttgtatt
cgtttgtatagtgaagatgactttaataaccgacctgagtttaccgatcctgagatcttg
cgtaccaatcttgcttcagtaattgtacaaatgctggctttaggcttgggtgatattgcc
gcttttccttttgtacaagcccccgagcgcaaatttattaatgatggcatccgtctttta
gaagagttgggtgcagtaagcgttttacaaaacaaactggccttaacaccgctaggtaaa
gagttagcgagtctgccggtagacccgcgcttagcgcgtatggtgctggcggcgcgtgag
ttaggttgcgtgaaagaagtaatgattattgtagcggccctgagtatccaagaccctcgg
gagcgtccgcaagataagcagcaagctgccgctgagcagcatcaacgttttgctgacacc
gactcagattttgccgcttatattaatctttggaattacgttaaagaacaacaagccttg
ctgagtaataaccagtttcgaaaactgtgtcagaaagagtttttaaattatttacgcctg
cgtgaatggcaagatatctacagccaattacgccaagtgcgcgacttaggtttttcacaa
aaccgtgagcctgctattagcgataatttacatgaagcgctattaagcggtttattaagc
caagtgggcatgcgtgatggcgataaaagagagttattaggcgctcgtaatacgcgcttt
atcctagctcccaattctaaactagctaaaaagccaccgcgctggttaatggtcgcagag
ttaatggaaacccatcgcttatatgggcgcattgcggcaaaaattgaaccacagtggata
gagcgccaaggtggccatttattaaaagcccattacagcgagcctcactggtcaaaaaag
caaggggcggtaatggcctttgtgagccttaatttgttcggactgccggtagtggtacga
agaagagtaaattacagccaagttgatcctacgctttgtcgtgagctttttattcgccat
gccttagtagaaggagacgttcatacccgacatgctttttttcatcataaccaagcatta
ttaagccaagctgaaacattggagcataagtcgcgccgtcgagatttggtgattgatgat
gaaacgctgtttgagttttatgatcaaaaactacctgcagacatcgtctcgttacgccac
tttgataaatggtggaagtcgcaagctaaagaccaagtacaactgtggcactttaatact
gaaatgttgctcaatgacagcgctaaacaggtgagtgccaccgattatcctgatacttgg
cattatgacggggttgctttagcgcttgaatatcaatttgagccagggcttaaagaagat
ggcgttacggtcaccattcccttgcccttgcttaatcaaattcagccccaagcgtttgtg
tggcaagtgccagggctgcgccgcgagctaattattggcttaataaagtcgttgcctaag
ccaatgcgcaagcattttgtgcccgcccctaattttgccgatgcactgttagccgccatg
cctgctcaagaagggtcattattagtacaaatggaaaagcagctgcgccgtatgaccggg
gttagtgtgcctgaagagcaatgggattggtcggcgctagcgcctcatttattaatgcgc
tttaatattgtggatgctaaaggagaaaccttggcggtggggcgagatcttgcggcgatt
aaattatctttgcaagggcaggtgcaaaccgcccttagtgatgcgctggatgaagatcgc
cttgaacaaactaaccttcgggattttccagcgcgcaccattcccaaaacatatgaagct
aaacgagcagggtttgcagttaaagcgtatccggccttggtggatcaccaagatagtgtg
gccttaactttatgtgaagatgaagtgactcaagcccagaccatgtggcagggacaaagc
cgtttattgttattgcaacttccatcccctattaaatacttacatgaaaagctgccgaat
aaggcaaagttaggcttgtactttaatccttatggtcgagtattggatttagtcgatgat
tgtattcgcgcaggcgtagaagtgttaatgcgccgttatcacgccccagcttggagccca
gatgagtttgcaatacttaaagaccaagtagggggtgagctaaatcacaccgtagccgac
attgccttgcaagtagaaaccttattaagccaaagccatgagattaaaaagcgcttaaaa
ggaaaaattgacctatctcaagcgatggccatgacggatattcaggcacagcttaataat
ttgatttttaagggctttgttaccgtgactgggggcgagcgtctcttggaggtgagtcgc
tatttaacggcgatactgcgccgccttgaaaagctacccatagatcctaaccgcgatcga
ttgcaattattaaaaattcagcaagtccaagacgcttatcaagcattattaaataaacag
cccaaaggccaagccttgcctgctgagattttagagatccgttggatgattgaagagttg
cgcgtgtccttttttgctcaaactctgggtacggcttatcccatttcagaaaagcgtatt
ttgcagcaaataaataatagttaa
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