Oceanisphaera avium: CBP12_02880
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Entry
CBP12_02880 CDS
T04855
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CBP12_02880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_02880
Enzymes [BR:
ocm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CBP12_02880
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CBP12_02880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ART79220
UniProt:
A0A1Y0CV54
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All DBs
Position
634932..638675
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AA seq
1247 aa
AA seq
DB search
MTDLLSRPLALRFPLYGSRLIEASAGTGKTFTISALYLRLILGHGNQAAFGRELLPPEIL
VVTFTDAATRELRDRIRARLVEAARVFRDELVGDALLAAFKADFEPARWLACAQRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLQTDHSELKAQVVRDYWRLHCYPLTGS
ALEWVISHWQSPSQLLSAIQPLLRQPSAQAQPKEPLVPLSELLEQLLQQRAQKLAKLKAP
WSVWLDEIARLLHSGIANKQVHGKWLQAKRTDTWLAGIKDWRDSEAIILELTDAAWQRLT
PAGLSEAWKVGEAPAHPAFEALETLREQLACLNAPLDPARLHAATWVSQRFQEEKRRRAE
MGFDDMLTRLDQALHGENGERLSAVIRNQFPVAMIDEFQDTDPQQYRIFDRIYGLSAASN
TGASERSDRGLFLIGDPKQAIYAFRGADIHTYLAARLATKGRHDSLDTNFRSSQDMVNSV
NRLFLAAEQRPAPAPYGAFLFGSEEDNPLPFTPVKAKGRAEQWCLKSAPDSPWQRQPALT
LWHAEQSEPLTASAYRQQMALSCASHITHLLNLGQKNCAGFIKDETVLALKPSDIAVLVR
NVTEAQAIRLALSERGVQSVYLSDKDSIFDSQEARDLVLWLRACAEPEQDRLLRSALASR
TLGQSLYELELLNQDEWHWERCVLQFRDYQYQWRRQGVLPMLRQLLHDFDLPSRLVQHSE
GERALTNILHLAELLQQAATNLDGEQALIRYLSERVQGDEPAGDEQVLRLESDAALVRVV
TIHKSKGLEYPLVFLPFICAHRETKSNEAVNVHDGKQTQLILTPNDQQLQLAEQARLRED
LRLLYVALTRSRHGCWLGLADIKNRAKGSVLHKSAIGQLLGGGEVLHHSAELAQWLAPLL
TDNPSEIAITALPQPCEQRLLNLASGKALPHWREPRRRAAEHWWISSYSALRTGALTTPK
TRFEDMSPEDAMAASGIDDDQETTQPIVSQPWTGASLHDFPRGPNPGTFLHGLLELAAAE
GFAYEAGGLSEQIARRCALRKLEQWTPHLQAWLSALLLTPLAGVKLNGVELCLGELTTFQ
AEMEFWLEASHVDVQQMDRLVQQHVLPGYTGAPLLSDTLNGMFKGFIDLVLEVDGRYFVV
DYKSNWLGADHESYTESAMKEQLIKHRYDLQYVLYILALHRQLKLRLAHYDYDQHVGGAI
YWFIRHPQAQYVSCPPKELIESLDALFNNQYQPLPAPYLAAEDNINE
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcttttatctcgcccgctggcactgcgctttcctttatatggcagtcgatta
attgaagccagtgcaggcacgggcaaaacctttactatttctgctctttatttacgctta
attttaggtcatggcaaccaggcggcctttgggcgtgagctattaccgccagagatttta
gtggtgacttttactgacgccgctacccgagaattacgggatcggatccgtgctcgccta
gttgaagccgcacgggtatttcgtgatgaattagtcggggatgcgttattagccgcattt
aaagccgactttgagccagcccgttggttagcctgtgcacaacgcttagacattgcagct
caatggatggatgaagccgcggtatcgaccattcatagctggtgtcagcgtatgctgcgt
gagcatgcttttgacagcgggagtttatttactcaaaccttacaaacggatcacagcgag
cttaaggcgcaagttgtgcgcgattattggcgactgcattgttatccgcttacaggcagc
gcgctggagtgggttattagccactggcaaagtccttcgcaattactaagcgccatacag
ccgttgttacgccagcctagcgctcaggctcaacctaaagagcccttagtgccactgagt
gagttgcttgagcagttattgcaacaaagagcacaaaagctggctaagctaaaagcccct
tggtcagtgtggctagatgaaatagcccgtttattgcacagtggtatcgcgaataaacaa
gtgcatggtaaatggctacaagcaaagcgcaccgatacttggctggccggtattaaagat
tggcgagacagtgaggcgattatcttggagctaactgatgctgcttggcaaagattaacg
cctgctggcctgagtgaggcgtggaaagtgggagaggcgcctgctcaccctgcatttgag
gcactagaaacgcttcgtgagcagctcgcttgcttaaatgcaccgctggatcccgccaga
cttcatgccgccacttgggtaagccagcgttttcaagaagaaaaacgccgtagagcagaa
atgggctttgacgatatgctaacgcgcttggatcaagctctacacggcgaaaacggtgag
cgcttaagtgccgttattcgtaatcagtttccggtggccatgattgatgaatttcaagac
acagatcctcagcaatatcgtatttttgaccgaatttatggactaagtgcagcgagcaac
accggtgcgagtgaacgctcagatcgcggtttatttttaattggtgaccctaaacaagcg
atttatgcctttagaggtgctgatatccatacgtatttggcggcgcgcttagctaccaaa
gggcgccatgacagtcttgataccaactttcgctcctcacaagatatggtaaatagtgtt
aatcgattatttttagcagcagagcaacgcccagcacctgcgccttatggggccttttta
tttggctctgaagaagataatccgctgccctttacgccggttaaagcaaaagggcgagcc
gagcaatggtgcctaaaaagtgcacccgatagcccttggcaaagacaaccggcgcttacc
ttgtggcatgccgagcaaagtgaacctttgacggcaagcgcataccgccaacagatggca
ctgagctgtgcaagtcacatcacccatttgcttaatttaggccaaaaaaactgtgctggt
tttattaaagacgagacggtgctggcactaaagcccagtgatatagcggtgttggtgcgc
aacgtcaccgaggcccaagccatacggctagccttgagcgagcggggcgtacaaagtgtt
tatttatcagataaagactctatttttgatagccaagaagcccgagatttagtgttatgg
ttgcgcgcctgtgctgagcccgagcaagaccgcttactgcgcagcgccctcgccagtcgc
acccttgggcaaagtctctatgaactggaattgcttaatcaagatgaatggcactgggag
cgctgtgtattgcaatttcgtgattatcaatatcagtggcgtcgccaaggcgtactgccg
atgttgcgccaattattgcacgactttgatttgccaagccgcttagtacagcatagcgag
ggagagcgggcgctgaccaatattttgcacttggccgagctattgcagcaagcggcaaca
aatttagatggcgagcaagcgctgatccgctatttaagtgaacgcgtccaaggcgacgag
cccgccggcgatgaacaagtattacgccttgaaagtgatgccgccttagtgcgggtggtc
accattcataagtctaagggcttggaatatcccttggtgtttttaccctttatttgcgct
catcgggagactaaaagcaatgaagcggtgaatgtacacgatggtaagcaaacccagctt
attctcactcccaatgaccaacagttacaactggccgagcaagcacgcttaagagaagac
ttacgcttattatatgtggcactgactcgctctcgccatggctgctggttagggctggct
gatattaaaaatcgcgctaagggctcggtattacataagtctgcgattggccaattactg
ggtggaggagaggtgttacaccatagcgctgaacttgcacagtggctagcacctttactc
actgataaccctagcgaaattgccattacagctctgcctcagccttgtgagcagagatta
cttaatcttgcctctggcaaggctctacctcattggcgcgagccgcgccggcgcgccgcc
gagcactggtggatttcttcttacagtgcactgcgcaccggtgccctaacgacgccaaag
acgcgctttgaagatatgagccccgaagatgcgatggcggcgagtgggattgatgatgat
caagaaaccacacagccgatagtgagccaaccttggaccggagcttcgttacatgacttt
ccacgaggacctaacccagggacgtttttacatggcttattagagctggcagcagcagag
ggttttgcttatgaggcaggcgggttaagtgagcaaatagcgcggcgctgtgcactaaga
aagttagagcagtggacgccacacttacaagcttggctgagtgcattactactgacgcca
ctggcgggggttaagcttaacggggtagaactgtgtttaggtgagctcacgacctttcaa
gcggaaatggaattttggttagaggccagtcatgtcgatgtacaacaaatggatcgctta
gtacagcaacacgttttgccgggctataccggagcgccattattatccgataccttaaat
ggcatgtttaagggatttatcgatttagtgttggaagtggatgggcgctattttgttgtg
gattataagtcgaactggctaggcgccgaccatgagtcctataccgagtcagcgatgaaa
gagcagctaatcaaacacagatacgacttacaatatgtgctctatattttagcgctgcac
cgccaacttaagttacgcttagcgcactacgattacgaccagcacgtaggcggcgctatt
tattggtttattcgccatccccaagcccaatacgtgagctgcccaccaaaagagttgatt
gagtccttagatgccttatttaataatcaatatcagcccttgccagcgccttatctagca
gccgaggacaatatcaatgaatag
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