Oceanisphaera avium: CBP12_08180
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Entry
CBP12_08180 CDS
T04855
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ocm
Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocm03009
]
CBP12_08180
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBP12_08180
Ribosome biogenesis [BR:
ocm03009
]
Prokaryotic type
rRNA helicases
CBP12_08180
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
SNF2-rel_dom
AAA_22
UvrD-helicase
AASDHPPT_N
Terminase_6N
CMS1
Motif
Other DBs
NCBI-ProteinID:
ART80125
UniProt:
A0A1Y0CZ83
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All DBs
Position
1773329..1774690
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AA seq
453 aa
AA seq
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MSTMTFEQLELDPVLVRALAEMGYAKPTTIQSQVIPEAMSGRDIMASAPTGTGKTAAFLL
PVCQHLLDFPRRNAGPTRILILTPTRELAMQIGDDAKKIVKHTPLKVEVITGGVHESQHL
PALTKTTDIVVATPGRLLQYIEEESFDSRDIEMLVLDEADRMLDMGFIREVDRIAAEARW
RRQTMLFSATLEGKSLMKFAADLLSNPVQLSAEPPRSERKKINQWVHLADNPEHKFALLV
HLLRQAEVKRSIIFVKTRDRLMELASRLQQEGLYNAWLRGEMEQEKRVEALGRFRIGRVN
ILVATDVASRGIDLPEVSHVINYDMPRTADVYVHRIGRTGRAGQKGTAISLVEAHDMPLL
LRIEKYIEEPLKRRIVDELRPQHKEARVNSGKRKDKNKNKQTSPVKKEKVRLRDTKAKGK
PKWAGPKPGEAVIPKPKKKAAPAPQWDDEDDDE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagcactatgaccttcgagcaactggaactggaccctgtcttggtccgcgcactggct
gaaatgggctatgcaaaaccgactaccattcagagccaagtgatacccgaagccatgagc
ggacgggacattatggcctctgcccccacaggtacgggtaaaactgcggcctttttatta
cccgtatgccagcatttactagactttccgcggcggaatgccgggcctacgcgcattcta
attttaacgcccacgcgtgagctggcgatgcaaattggtgacgatgctaaaaaaattgta
aagcacacccctttaaaagtagaagtgatcaccggtggcgtgcatgaaagccaacattta
cccgcgctcactaaaactaccgatattgtggtggcgacgccggggcgtttgttgcaatac
attgaagaagagtcgtttgatagccgcgatattgaaatgctggtgctcgatgaggcagac
cgcatgcttgatatgggctttatccgcgaagtggaccgtattgccgcagaagcgcgctgg
cgtcggcaaaccatgttgttttcggctacgttagaaggcaaaagcttaatgaagtttgct
gccgatttattaagtaaccccgttcaactgagtgccgagccaccgcgcagcgagcgtaaa
aaaatcaaccagtgggtgcacttagccgataatcctgagcacaagtttgctttattagta
catttattacgccaagcagaagtaaagcgcagcattatttttgtgaaaactcgcgatcgc
ttaatggagctggcgagtcgcttacaacaagaagggctgtataacgcttggttgcgcggc
gaaatggagcaagaaaagcgcgttgaggcgctgggccgctttcgaattgggcgagtcaac
atcttagttgccaccgatgtggcctcacgaggcatagacttacccgaagtgagtcatgtt
attaactacgatatgccgcgcaccgctgatgtctatgtacaccgcattgggcgcaccggt
cgtgccggccaaaaaggcaccgccattagcttagtcgaagcccatgacatgcccttatta
ctacggatagaaaaatacattgaagagccgcttaagcgccgtatcgtcgatgagttaagg
ccgcaacataaagaagcgcgggtaaactcaggtaagcgcaaagataaaaacaaaaataag
cagacaagcccagttaaaaaagaaaaggtacgcttgcgtgatactaaggctaagggcaag
ccaaaatgggcaggccctaaacccggtgaagccgtgatccctaagcctaagaaaaaagct
gctcccgcgccgcagtgggatgatgaggatgacgacgagtaa
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