Oceanisphaera avium: CBP12_08410
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Entry
CBP12_08410 CDS
T04855
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ocm
Oceanisphaera avium
Pathway
ocm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CBP12_08410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocm03021
]
CBP12_08410
Transcription machinery [BR:
ocm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CBP12_08410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
FAM176
CENP-B_dimeris
Motif
Other DBs
NCBI-ProteinID:
ART80168
UniProt:
A0A1Y0CY36
LinkDB
All DBs
Position
1823722..1825557
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AA seq
611 aa
AA seq
DB search
MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQIEDIIQMINDMGIQVVETAP
DADDLMMSETSADEDAAEAAAQALASVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQSSVSEYPATITTLLDQFDRFEAGDIKLSDIITGFLDPDAEEPPAPTATH
IGSELSEEDKEEDEDDEDKEDEEEVDTGPDPELAREKFGVLREQYEKMRGVIDSKGRTSA
EAAKEIAELAYIFREFRLIPKQFDRLVNAMRDTMVRVRVQERLILKLCVEQCKMPKKTFV
QAFSKDEANPEWFNSLVAAGKTAWAVRLSEVAEDVLRSIGKLKQVEEEADLTITQIKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEE
LAHRMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPADQATSESLRN
ATKDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaccccacagtcgcagcttaaacttctcgttgccaaaggtaaagaacagggc
tacctgacttatgccgaggtcaacgatcaccttccacaagacattgtcgactcagatcaa
attgaagatattattcaaatgatcaatgacatgggtattcaggtggtagaaaccgccccc
gatgccgatgatcttatgatgtctgaaacctcggccgatgaagatgcagccgaagccgcc
gcgcaagcgctcgcttccgttgagtcagaaattggtcgcaccacagacccagtgcgtatg
tatatgcgcgaaatgggtacggtggagctgttaacacgtgaaggcgaaattgaaatcgct
aaacgtattgaagacggcattaatcaagtgcaaagctcggtatctgaataccccgcgact
atcactacattattagatcagttcgaccgctttgaagcaggcgatattaagcttagtgat
attatcaccggctttctcgacccagatgcagaagagccgcccgcccctacggccacgcat
attggttctgagctaagcgaagaagataaagaagaagacgaagacgacgaagataaagaa
gacgaagaagaagttgataccggccctgatcctgaattagcccgtgaaaaatttggcgta
ttgcgtgagcagtatgaaaaaatgcggggggttattgacagtaaaggtcgaacgtctgct
gaagcggcaaaagaaatagccgaactggcttatattttccgtgagtttcgcctgatccct
aagcagtttgaccgcttagtaaatgccatgcgtgacactatggtacgggttcgtgtgcaa
gagcgcttgatccttaaactgtgtgttgagcaatgcaagatgccaaagaaaaccttcgtg
caagcgttttctaaagatgaagctaacccagagtggtttaatagcttagtggctgctggc
aaaaccgcgtgggcagtgcgcttaagcgaagtggcagaagatgtgctgcgctctattggt
aagcttaagcaagttgaagaagaagcagacttaaccattacgcaaattaaagatattaac
cgtcgtatgagtattggtgaggccaaagcccgccgtgctaagaaagagatggtagaagct
aacttgcgtttagttatttctatcgctaaaaaatacaccaaccgcgggttacagttcttg
gacttaattcaagaaggtaatatcggcttgatgaaagcggtagataagtttgaataccgt
cgtggttataagttttctacttacgccacttggtggatccgccaagcgatcacccgctct
attgctgaccaagcgcgtaccattcgtattccggtgcacatgattgagaccattaataag
ctcaaccgtgtatcacgccaaatgctgcaagaaatgggtcgtgagccaacaccagaagag
ctggctcatcgcatggtgatgcctgaagataaaattcgtaaagtgctgaagattgccaaa
gagccgatttccatggaaacgcccattggtgatgatgaagactctcacttaggcgatttt
atcgaagataccactttgtcgctgccggctgaccaagcgaccagtgagagcttgcgcaat
gccaccaaagatgtgctctctggcctgaccgcccgtgaagctaaggtactgcgcatgcgt
tttggtattgatatgaataccgatcacacgctggaagaagtgggtaaacagtttgacgta
acgcgtgagcggattcgccaaattgaagcgaaggcgctgcgtaaattacgccaccccagt
cgctcagaagtgctgcgtagcttcctcgacgagtaa
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