Oceanisphaera avium: CBP12_08970
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Entry
CBP12_08970 CDS
T04855
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBP12_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocm03021
]
CBP12_08970
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_08970
Enzymes [BR:
ocm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBP12_08970
Transcription machinery [BR:
ocm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBP12_08970
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBP12_08970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
GDPGP1_N
Motif
Other DBs
NCBI-ProteinID:
ART80265
UniProt:
A0A1Y0CZN0
LinkDB
All DBs
Position
complement(1944576..1948775)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLKFLKAQNKTEEFDGIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIEAGMTSLERGQMLSEEQYLDALEEWGDEFDAKM
GAEAVLSLLSAIDLGAEIEAMREELSQTNSETKRKKITKRFKLMEAFFGSGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREEAVVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMILTSAKEAEKVYRGG
HAELHAKVKIRITDFERMEDGTEVETTSIRDTTIGRAILSLIVPKGLPFSMIDHPMGKKQ
ISKLLNACYRRLGLKDSVIFADQLMYTGFHYATLSGVSVGINDMVIPDAKKHIIDEAEAE
VTEIQDQFQSGLVTAGERYNKVIDIWASANERVSKAMMENLSKDKVIDAEGNEVLQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITSDDCGTFDGLWITSLIEGGDVVEPLRERVL
GRVVAEDVIRPGTEDEVLVARNTLLDEKWCDVVEDSSVDGIMVRSVITCDNDHGVCAHCY
GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAENSIQVKNAGTVK
LLNAKYVTNNEDKTVIVSRSSELTIIDELGQTRENHKLPYGALLDKADGEEVQVGQLVAT
WDPHTHPIVTEVAGHVKFIDMIDGVTISRQTDELTGLSSIVVMDVNERPASGKDLRPTVK
LIDDNNNDVIIPGTDLSALYFLPGRSIVSLEDGAVVNVGDAIARIPQESSGTKDITGGLP
RVADLFEARLPKEPAILAEISGTISFGKETKGKRRLVITPLDGGDAFEEMIHKWRHVNVF
EGEKVEKGEVLADGPESAHDILRLRGISPVANYIVNEVQEVYRLQGVKINDKHIETIVRQ
MLRRAEIMNAGDSDFINGEQAEVVRIRQANRALIAANKQPVEYRHVLMGITKASLSTESF
ISAASFQETTRVLTEAAVSGKVDNLRGLKENVIVGRLVPAGTGFAYHQTRNAQRNPDQAV
TVSADEAEQNLADLLNAAK
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttttgaaagcgcagaataagacagaagagtttgatgggatc
aaaattggtctggcctccccagacatgatccgctcttggtcttttggcgaagtcaaaaag
cctgagaccattaactaccgtaccttcaaaccggagcgtgacggccttttctgtgctcgg
atctttggtccggtcaaggactatgagtgtctgtgtggtaagtacaaacgccttaaacat
cgtggtgttatctgcgaaaaatgtggcgttgaagttacccagaccaaagtgcgccgtgag
cgcatgggccacattgagctagccagccctgttgcccatatctggttcttgaagtccctg
ccaagccgtatcggtttattgctggatatgaccttgcgtgatatcgagcgcgtcctgtac
ttcgaatcctttgtggtgatcgaagcgggtatgaccagtcttgagcgtggccaaatgctg
tcagaagaacagtatttagatgcactcgaagagtggggcgatgaatttgacgccaagatg
ggtgccgaagcggtactgtctttgctaagcgccattgatttaggtgctgaaattgaagcc
atgcgcgaagagctgagccaaactaactcagaaactaagcgtaagaaaattaccaagcgc
ttcaaactgatggaagctttcttcggctcaggcaacaagccagagtggatggtactgacc
gtattgccagtattgccaccggacttacgtccgctagtaccgctggacgggggtcgcttt
gcgacttcagatctgaacgatttatatcgtcgtgtgatcaaccgtaacaaccgtttaaaa
cgtctgctggatttagcggcgcccgatattatcgtgcgtaacgaaaagcggatgctgcaa
gagtctgtagatgccttgcttgataacggtcgtcgcggtcgtgccattactggctctaac
aagcgcccactgaaatccttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgcttggtaagcgtgttgactactccggtcgttcggtcatcgtagtaggaccgacc
ttgcgtttgcatcagtgcggtctgccgaagaaaatggccctcgagttatttaagccattt
atctatggcaagctagaaggccgtggtttagccactaccattaaagcggctaagaagatg
gttgagcgtgaagaagctgtggtgtgggacgttttagatgacgtgatccgcgaacaccca
gtattactgaaccgtgcacctactttgcaccgtttgggtattcaagcgtttgagccagtg
ttgatcgaaggtaaagcgattcagttgcacccactcgtgtgtgcggcctataacgccgac
tttgatggtgaccaaatggcggtccacgtaccgctgaccatagaagcacagcttgaagcg
cgtgcacttatgatgtccaccaacaacatactgtctccggctaacggcgaacctattatt
gtaccctcgcaagacgtggtattaggtttgtactacatgacccgcgataaagtgaatgcc
aaaggtgaaggcatgatcttaaccagcgctaaagaagcggaaaaggtctatcgcggtggt
catgctgagctgcatgctaaagttaaaattcggattacggattttgaacgcatggaagat
ggcaccgaagtcgaaaccacgtctattcgtgataccactatcggtcgcgctatcttgagc
ttgattgtgccaaagggcttaccttttagcatgatcgatcaccctatgggtaagaagcag
atctcaaaattactgaacgcttgttaccgtcgtttagggttgaaagactccgttatcttt
gctgaccaattgatgtataccggtttccattatgcaacgctgtctggcgtgtccgttggt
attaacgacatggtgattccagatgcgaagaaacacatcattgatgaagctgaagccgaa
gtaaccgagatccaagatcaattccagtctggtctggtgaccgcgggtgagcgttataac
aaagttatcgatatttgggccagtgctaacgagcgcgtgtctaaagcgatgatggaaaac
ttatcgaaagataaggtgatcgacgctgaaggcaatgaagtactgcaagactcatttaac
agtatctttatgatggccgactccggtgctcgtggtagtgccgcccagatccgccagctc
gcggggatgcgtggcctgatggcaaaacccgatggctccatcattgaaacaccgatcatt
gctaacttccgtgaaggcttgaacgtacttcagtactttaactccacccacggtgctcgt
aagggtctagcggataccgccttgaagacggcgaactccggttacctaacacgccgcttg
gtagacgttgcccaagatttggtgattacctctgatgactgtggcactttcgacggtctg
tggattacttccctgattgaaggcggtgacgttgttgagccattacgtgagcgcgtatta
ggccgagtggtggctgaagatgtgatccgccctggtaccgaagatgaagtgttggttgcc
cgtaacaccctgctcgatgagaagtggtgtgatgtggtagaagacagctccgtcgatggc
attatggtgcgctcggttatcacctgtgacaatgaccatggcgtgtgtgcccattgttac
ggtcgtgatttggctcgtggccacttggttaaccaaggtgaagcggtgggcgttatcgct
gctcaatctatcggtgagccgggtacccagttaacgatgcgtaccttccacattggtggt
gccgcatcgagagcggccgcagaaaacagtattcaggtgaaaaatgccggtactgttaag
ctgttaaacgcgaaatatgtgaccaacaatgaagacaaaaccgttattgtgtcgcgctct
tctgagctgaccattatcgatgaactaggccaaactcgtgaaaaccacaagctaccctac
ggtgccttgttggataaagcggacggtgaagaagttcaagtgggtcagttggtcgccact
tgggacccgcacactcaccctatcgttaccgaagtagccggtcacgttaagtttatcgac
atgattgatggcgtgaccattagtcgacaaaccgatgagctaacgggtctgtctagtatc
gtagtgatggatgtgaatgagcgtcccgcttctggtaaagacttacgtccgaccgttaag
ctcattgatgacaacaataatgacgtcatcattccaggtactgacttatctgcgctgtac
ttcttaccaggtcgctctattgtgagcttggaagatggtgctgtggtaaacgtgggtgat
gcgattgcgcgtatcccacaagagtccagtggtactaaagatattaccggtggtctgcca
cgagttgctgacttatttgaagcacgtttaccgaaggagccggccattttggcggaaatc
tccggtaccatttctttcggtaaagaaaccaaaggcaaacgccgcttggtgattacgccg
ttagatggtggtgatgcctttgaggaaatgatccacaaatggcgccatgtgaacgtgttt
gaaggtgagaaagttgaaaagggtgaagtcttggccgatggtccagaatctgcccacgat
atcttgcgcttgcgtggcattagccccgttgctaactatatcgttaacgaagtgcaagag
gtttaccgcttgcaaggcgttaagatcaacgataagcacattgaaactatcgtacgtcag
atgctgcgccgcgccgaaattatgaatgccggagattccgacttcattaacggtgagcaa
gcagaggtggtacgtattcgccaagctaaccgcgcactcattgctgcgaataagcaaccg
gtagaatatcgccatgtcttgatgggtatcactaaggcctcgttaagcaccgaatccttt
atctcggcggcgtctttccaggaaaccactcgcgtgctaactgaagctgcggtgtctggc
aaggtagataacttgcgtggtctgaaagagaacgtaattgtgggccgtttagttcctgca
ggtacgggctttgcttaccatcaaacccgcaatgctcagcgtaatccggatcaagcagta
actgtctcggccgatgaagccgaacaaaatctggctgatctgttgaatgcagctaagtaa
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