Oceanisphaera avium: CBP12_10025
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Entry
CBP12_10025 CDS
T04855
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03420
Nucleotide excision repair
ocm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBP12_10025
03430 Mismatch repair
CBP12_10025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_10025
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBP12_10025
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBP12_10025
MMR (mismatch excision repair)
Other MMR factors
CBP12_10025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_12
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ART80439
UniProt:
A0A1Y0CYS4
LinkDB
All DBs
Position
complement(2182846..2185014)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGMNDEQREAVAAPAQNMLVLAGAGSGKTRVLVHRIAWLMQVEQVPASAILAV
TFTNKASAEMRSRVEKLLGGRLFGLWLGTFHGLAHRLLRAHHLDAKLPQDFQILDSDDQQ
RLLRRILKGMNLDEKQWPPRQAAGFINARKDEGLRPKDIQVLHDPVQQTYQRIYQVYQET
CDRAGLVDFAELLLRAHELWLYKPHILAHYQDRFRHILVDEFQDTNSIQYAWLQMLAGSQ
ANVMIVGDDDQSIYGWRGAKVENIARFLQDFPGSATIRLEQNYRSSATILKAANSLIANN
MERMGKELWTEGEQGEPISVYGAYNEVDEARFVVSQIQQWQQQDNDLSEAAILYRNNAQS
RVLEEALIQARLPYRIYGGLRFFERQEIKDALSYLRLMNNRGDEAAFERIVNTPTRGIGE
RTLGIIRAAARERQLTMWQAAWALVEEKVLAGRAATAVSRFLALINQLEDDTRELPLHVQ
TDRVIETSGLKAMYQAERGEKAQARVENLEELVSATRQFLPSEDDDMSLLSAFLSHAALE
AGENQADQFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQQSAEESQRLEEERRLAYV
GMTRAMSKLFISHAETRRVYGKEMFHRPSRFIKELPQDCLEEVRLKASVSRAMPNGRFSQ
DRVQDTFNETGFRLGQRVAHPKFGEGVVLNFEGAEAHSRVQVQFADGGSKWLVTAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttccagcctgcttgacggcatgaacgacgagcaacgagaggcggtggccgct
cccgcccagaatatgctagtgctggcgggagcaggcagtggcaaaactcgggtgctggtg
catcgcattgcctggttaatgcaagtagagcaggtgccggcgtcggctattttggcggta
acctttactaataaagcttctgccgaaatgcgctcccgagtagagaagttattaggcgga
cgcttatttggcctgtggctgggcacctttcacggtcttgctcaccgtttactacgcgct
catcatctggatgctaaactgccgcaagactttcaaatactcgactccgatgatcagcag
cgcttactgcgccgtatccttaaaggcatgaatttagatgaaaagcagtggccaccgcgc
caagcagcaggctttattaatgcccgcaaagatgaaggtttacgcccaaaagatattcaa
gtcttgcatgatccggtgcaacaaacttaccagcgtatttatcaggtttatcaagaaacc
tgcgaccgtgctggcttagtcgacttcgccgagctattactgcgcgcgcatgagctctgg
ctctacaaaccgcatattttagctcactaccaagaccgctttcgccatattttggtggat
gaatttcaagataccaacagcattcaatatgcgtggctgcaaatgctagccggcagccaa
gccaatgtcatgatagtgggtgatgatgaccagtccatttatggctggcgcggggcgaaa
gtggaaaacattgctcgtttcttacaagactttcccggctcggccaccatccgacttgaa
caaaattatcgctccagtgccactatcctaaaagccgctaatagcttgattgctaataat
atggagcgcatgggtaaagagctgtggaccgaaggcgagcaaggcgagccgatatctgta
tatggcgcctataacgaagtagatgaagcgcggtttgtggtgtcacaaatccagcaatgg
cagcaacaggataatgacttaagtgaagcggctatcttatatcgcaataatgcgcaatca
cgagtattagaagaggccttaattcaagcgcgtctaccttatcgtatttatggcggcttg
cgtttctttgagcgccaagaaattaaagacgcgctcagttatctgcgcttaatgaataat
cgtggtgatgaagccgcttttgagcgcatcgtcaatacgcccacccgcggtataggcgag
cgtaccttaggtattattcgcgctgctgcgcgcgagcgccaactcactatgtggcaagcg
gcgtgggcgttagttgaagagaaagtcttggcgggacgcgccgctactgcggtcagtcgc
ttcttagcattaattaaccagctagaagatgatactcgtgaattgccgctacatgtacaa
acggaccgcgtgatagagacttcgggtttaaaagccatgtatcaggcggagcgcggcgaa
aaagcccaggcaagggtagaaaacttagaagagctggtgagtgcgactcgccagtttttg
ccctcagaagacgatgatatgtctttgctgtcggcgtttttatctcatgcggccttagag
gccggtgaaaatcaagcggatcagtttgatgatgcggtgcaactcatgacgctgcactcg
gccaaaggcttggaattcccgctggtatttatggtgggcgtagaagagggcatgtttccc
agccagcagtctgcagaagaaagccagcgcctggaagaagagcgccgtctcgcttatgtg
ggcatgacgcgagccatgagtaagctatttattagccatgccgaaacgcggcgcgtctat
ggtaaagaaatgttccatcgtcccagtcgctttattaaagagctgccacaggattgttta
gaagaagtgcgccttaaagccagtgtcagtcgtgctatgcctaatggccgtttcagtcaa
gaccgcgtacaggacacctttaatgaaaccggttttcgtttagggcagcgggtggctcat
cctaagtttggtgaaggcgtggtgttaaattttgaaggcgctgaggctcatagccgcgtg
caagtccaatttgcagatggcggtagcaagtggctagtcaccgcgtatgcgcgattagaa
gcgctgtaa
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