Oceanisphaera avium: CBP12_10615
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Entry
CBP12_10615 CDS
T04855
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ocm
Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocm03016
]
CBP12_10615
Enzymes [BR:
ocm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBP12_10615
Transfer RNA biogenesis [BR:
ocm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CBP12_10615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
ART80535
UniProt:
A0A1Y0D0J2
LinkDB
All DBs
Position
complement(2321535..2323499)
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AA seq
654 aa
AA seq
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MFQNNPLLAQLKQQMRDDLTIKEGVVKGTSKGFGFLEVGEKESYFIPPPHMKKVMHGDHI
TAILRTENERELVEPEKLIEAGVTRFVARVKWFRDRLNLVPDHPLMNEAIKARTVKGLNE
KSLKEGDWVLAEMTSHPLKGNGFFANVVEVIAGVDDPIAPWWVVLARNNLSKVAPEDSKD
WQQVPDTLARRDLTDIPFFTIDAESTLDMDDALSIKKLDDGWELLVAIADPTAYVPQGSV
MDKVAAERAFTAYLPGRNIPMLPRTLSDELCSLQEGVERPVICARLFIDNEGKVADKAEF
FAATMRSHARLSYDNVSDWIEEKGDWQPANEVIAEQIRQMHAFTLVRAAWRAKHAIVFKD
RPDFRFALDADSNVTAILVDYRRIANQMVEESMIAANLACGNWLNEHVGAGIFNVHAGFD
SEKMDGLTELLTAHDAPFDPATINTLAGFCALRRWLDERETSYLDSRTRRFQSFAAMSAN
PGAHFGLGLDAYATWTSPIRKYGDIINHRLIKAVLAGQDHKDLLPSNELATHLSDQRRMH
RRAERDIADWLYVRFLKPAVAEGKVFDADVVDVSRGGVRLRLHENGAGVFMPSSLILANR
DRLECSWDDGRVYLDKAPLYELGQVVQIIITEAIEETRSLIAKPAQPIASAASQ
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataaccccctattagctcagctaaagcaacaaatgcgtgacgaccttact
atcaaagaaggtgtcgttaaaggcacatctaaaggctttggctttttagaagtcggcgaa
aaagaaagttactttattcccccgccccacatgaaaaaagtcatgcatggcgatcatatt
accgctattttacgcaccgaaaatgagcgcgagctggtagagccagaaaaactaattgaa
gccggcgtaacccgctttgtagctcgcgttaagtggtttcgtgaccgattaaacttggta
cccgaccaccctttaatgaacgaagccattaaagcccgcaccgttaaaggcttaaatgaa
aaaagcttaaaagaaggcgattgggtgctggctgaaatgacttcacacccgctaaaaggc
aatggttttttcgccaatgtagtggaagtgattgccggtgttgatgatcctattgcccct
tggtgggtggtactagcgcgcaataatctgtctaaagtcgcccccgaagacagcaaagac
tggcagcaagtgcccgataccttagcgcgtcgtgatctcacggatatcccctttttcacc
atagacgccgaatccacgctggatatggatgatgcgctaagcattaaaaagcttgatgac
ggctgggaactgttagtggccattgccgatcccacggcgtatgtaccccaaggcagtgtg
atggataaagtggccgctgagcgcgcttttaccgcttacttgccagggcgtaatatccct
atgttgccacgcaccttgtctgatgagctgtgctcattacaagagggcgtagagcgtccc
gttatttgtgcccgcttatttattgataatgaaggtaaagtcgcagataaagcagaattt
tttgccgcgactatgcgctcgcacgcgcgcttaagctacgacaatgtgtctgattggatt
gaagaaaaaggcgactggcagccagctaatgaagttattgctgagcagatccgtcaaatg
catgcctttactttagtgcgcgccgcttggcgagctaagcatgccatcgtgtttaaagac
cgccccgattttcgctttgcgctagacgccgacagcaatgtcacggctattttggtggat
taccgtcgtattgccaaccaaatggtagaagagtcgatgattgctgccaacttagcctgt
ggtaactggctaaacgagcatgtgggcgcgggtatctttaacgtgcatgccggctttgat
agcgaaaaaatggacggcttaactgagctattaaccgcacacgatgccccttttgacccc
gccactatcaatacgctagcgggtttttgtgccttgcgccgttggttagatgagcgcgaa
acttcttatttagatagccgtactcgtcgcttccaatcttttgccgccatgagcgccaat
ccaggtgctcactttggcttaggtttagatgcctacgctacttggacctcacctattcgc
aaatacggcgatattattaatcatcgtcttattaaagcagtcttggcaggccaagatcat
aaagacctgttacctagcaatgagctagcgactcatttatcggatcagcgccgtatgcat
cgccgtgccgagcgcgatattgctgattggttatatgtacgcttcttaaagccggccgta
gccgaaggtaaagtctttgatgcggatgtagtagatgtgagtcgtggtggcgtgcgtttg
cgtttacatgaaaatggcgccggggtatttatgccctcgtcacttattttagccaatcgc
gatcgcttagagtgcagctgggatgatggccgcgtttatctagataaagcgccgttatat
gagctaggccaggtagtacaaattattattaccgaagccattgaagaaactcgctcttta
attgctaaacctgcacaacccattgcgagcgccgcttcgcagtaa
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