Oceanisphaera avium: CBP12_12050
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Entry
CBP12_12050 CDS
T04855
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ocm
Oceanisphaera avium
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocm03019
]
CBP12_12050
Messenger RNA biogenesis [BR:
ocm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBP12_12050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
ART80796
UniProt:
A0A1Y0D0Y5
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All DBs
Position
2614692..2616701
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AA seq
669 aa
AA seq
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MKFTNQFITTISLCILTVVMIVLIGAGISFYHMGSLYQQRQVDTVLRLVDEGWQASKAQP
DIIDAWLPNILEVNGIIDFTLLQDKVPVYHSARLDAAATAGDVFTMEYTAALNAEENLVA
RLVLRPPFYNIDHSFASLAGISGAIIVILVGSLIMLRWFRRQFRGAELLALRSEAILQDK
PFLSFHDHRLEWPHQASQALDKLALALKDARKERSRFDSFMRANVFLDRKIGIGNRVFFD
NRLEAALNDPACHGGALLLVEIQDLMKINYHFDYERGDELLTAASIYMGHFVRGTPGALQ
ARYTGNTFAILLPNTVESEAQEAARQLMKVLRRLNWPEEMTDPAVFIGGVCFSFAEPIQQ
IQEEAELALRSAELQGGEGYFIYYKGVTEENMGKGTVRWRTLLTRVLAQQKIQLDRQGIY
IAPHQAPIMYELLARIQDEQGRELSAGQFFPMAEKCGLLYELDRNILSQALARLAKTEPG
VSLAVNLSATSLLQSQFYKWLLFELLQIPKVHLNKLVIDLSEAQVSRHFHDLIIPLRALK
KLGCQLAVDHAGQDVVSTQYVKDYELDYLKLHPSLVRDIDTKPVNQMAVSSLIGNSAGGK
TKVIAMGVETLGEWQCLSQLGVYAGQGYFFAYPELGAEGKKGGAASAHASANFTGLLSPT
ARPLKATGV
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccaatcaatttattactaccattagcctatgtatattgactgtggtcatg
atagtgctgatcggtgctggcattagcttctaccatatgggctcactctatcagcagcgt
caagtcgatacggtgttgcgcctcgtcgatgagggctggcaagcgagcaaagcccagcct
gacatcatagatgcttggctacccaatatcttagaagtcaatggcatcatcgatttcacg
ctattgcaagataaggtgcctgtttatcattctgcgcgcttagatgctgctgccacggca
ggcgatgtctttacaatggaatacacagctgcgcttaatgctgaagaaaacttagtcgct
cgcttagtattacgccctcctttttataatatcgatcattcctttgcttccttagcgggc
atctcgggtgcaattattgtgatactcgttggctcgctcatcatgttgcgctggtttcgg
cgccagtttcgcggcgctgagctgttagcgctgcgcagtgaggctattttacaagacaag
ccctttcttagctttcacgatcaccgcttagaatggccgcaccaagctagccaagcgcta
gataaactggcgttggcgctaaaagatgcccgcaaagagcgcagtcgcttcgactctttt
atgcgagccaatgtatttctcgatagaaaaataggcataggaaatcgagttttttttgat
aatagactagaagccgctctcaatgatcccgcctgccatggtggcgccttattattagta
gaaattcaagatttaatgaaaattaactatcactttgattatgaaagaggtgatgagtta
ctcaccgctgcctctatctatatgggccattttgtacgaggcacgccaggtgctctgcaa
gcacgctacaccggtaacaccttcgctattttattgcccaacacagtggaaagtgaagct
caagaagcggcgcgccaactgatgaaagtactacgccgccttaactggccagaagaaatg
acagatccggcagtctttattggcggtgtctgttttagttttgccgagccgattcaacaa
atacaagaagaagccgaattggcactgcgcagtgctgagttgcaaggcggcgagggttat
tttatctattataaaggcgtgacagaagaaaatatggggaaaggcacggtgcgctggcgc
accttgctgactcgagtattagcgcaacaaaaaattcagttggatcggcaaggtatttat
attgcgccccatcaagcgcccattatgtatgagctgttagcgcgcatccaagatgagcaa
ggccgtgaactatcggcggggcagtttttccctatggcagaaaaatgcggtctactctat
gaactagaccgcaatattctttctcaagcactggcacgcttagcgaaaaccgaaccaggc
gttagcctagcggtgaatttatcggcgactagcttattacaaagccagttttacaagtgg
ctgttatttgaattactgcagatacctaaagttcatcttaataagttagtgatcgacttg
tctgaagcccaagtgagccgccattttcatgacttaatcatccccttgcgagcccttaaa
aaattaggttgccagttagccgtcgatcatgccggccaagatgtagtgagtacgcaatat
gttaaagattacgagcttgattatctaaaactacatcccagcttagtgcgtgatatcgat
acgaaacccgttaatcagatggccgttagcagcttaattggtaatagcgccggcgggaaa
accaaggtaatcgctatgggtgtggaaacgctaggcgagtggcagtgtttatcgcaatta
ggcgtttatgccggacaaggttacttttttgcctatccggaattgggcgccgagggtaag
aaggggggcgctgcctcggctcatgctagtgccaactttacgggattattaagccctact
gcgcgccccttgaaggccaccggtgtgtaa
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