Oceanobacillus zhaokaii: CUC15_00315
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Entry
CUC15_00315 CDS
T05570
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocn
Oceanobacillus zhaokaii
Pathway
ocn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUC15_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocn03400
]
CUC15_00315 (mfd)
Enzymes [BR:
ocn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUC15_00315 (mfd)
DNA repair and recombination proteins [BR:
ocn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUC15_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AXI07547
UniProt:
A0A345PC17
LinkDB
All DBs
Position
57572..61099
Genome browser
AA seq
1175 aa
AA seq
DB search
MKGINQFLQSKEDIQSIIHGITNGMKEQLVAGLSGSARSLLVSVINESINKPILLVTHQL
VQAQQLYDDLSEFMDEKNVYLYPVNELIASEIAIASPELRSQRIESLMEWSKKQSGILIA
PVAALKRILPQPAYWDKYQLLFKVGEDIEIDTYLASLVDMGYERSTMVTTPGEFSKRGGI
IDIYPITEEHPIRIELFDEEIDSIRFFDAETQRSLTKKEEVMVGPATELLLTQEDILTAS
ERIEEALAETLKKVKTASVKEELVGAMEQDISRLRNLERFQEMYRYIGFYYNEPASLLDY
LPEDGVIILDEMSRIQETASNLDAEEAEWYSNLLESGKMVQNSRFSFDFHTVQEKMRQQR
LYTSVFLRHIPNTQPQNIINLSSRAMQEFHGQMHLFKTELKRWEKGDFSVVIMAPDEKRA
EKIHSILLDYEIEAAVTDDLKLPVEVPTITVGNITNGIEFPMYKLVLITENELFKKKTKR
NRRQQKISNAERIKSYQELKVGDYVVHANHGVGKYLGIETLEVNKLHKDYMLVRYSGDDK
LYVPIDQIDLVQKFVGSEGKEPKLYKLGGSDWTKVKRKVQSSVEDIADDLIKLYAEREAR
KGYAFSEDTEMQREFEASFPYQETEDQLRCIEEIKQDMERERPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVAILVPTTILAQQHFETVRERFQDHAINIGLLSRFRTRKEQTETIKG
LKMGTVDIVIGTHRVLSKDIEFRDLGLLIVDEEQRFGVKHKEKIKQMKSNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNPILVREAIEREMAREGQVFFLYNR
VENIDKVARDIGMLVDDARIAVAHGQMNETELESIIFGFLEGEYDVLVSTTIIETGVDIP
NVNTLIVSNADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDMYSQMLSDAIEARKIGKEIEDITPF
EPELALSVDAYIPDEYIKDEKQKIDIYKQFRALDSKNDIEDLKDELIDRFGDYPDEVGNL
FIVTILKMYARKERVESITEKGNKITLLMEENRSQQIDGSKLFELANKFGRGVQLGTENT
KLKVVFQSSKETEHNRYDEVEAFIKKLNTVNRDDA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaattaatcaatttttacaatcaaaggaagatatacagtctattattcatggc
ataacaaatggaatgaaggagcagcttgtagcgggactctctggttctgcaaggagtttg
cttgtttccgttattaatgaatctattaataaaccaattttattagtgacacatcagctc
gtacaagcgcaacaactatacgatgatttgtctgagttcatggatgagaaaaatgtctat
ttatatcctgttaatgaattaatcgcatcagaaatagcgattgctagtccagaactaaga
agccagagaattgaatcattaatggaatggtcaaaaaagcaatctggtattctaattgct
cctgtagcagctttaaaacgaattctccctcagccggcatactgggataaataccaattg
ctatttaaagttggcgaggatattgagatagatacttacctggcgtcattagttgatatg
gggtatgaacgatcaacaatggtgacgacaccaggagagtttagcaaacgtggcggaata
atagatatatatccaataacagaggaacatccaatccgaattgaattgttcgatgaagaa
attgactccatccgcttctttgacgcagaaacgcagcgttctttaacgaaaaaagaagaa
gtaatggttggaccagcgacagagttattgcttacacaggaagatattctaaccgcttcg
gaacggatagaggaagcactggccgaaaccttaaaaaaagtgaagactgcatcggtaaaa
gaagagctggtcggcgcaatggaacaagatatcagccgtttgcgcaatttagagcggttc
caggaaatgtatcgctatattggcttttactacaatgaacctgctagtctattagattat
ctgccagaagatggggttattattttagatgaaatgagcagaatccaagaaaccgcttcg
aatttggatgcagaagaagcggaatggtatagtaatttacttgaatcaggaaaaatggtg
caaaatagtagattctcattcgactttcatacggttcaagaaaagatgagacagcagcgc
ctgtatacgtctgtttttttacgacatatcccaaacacacagccacagaatatcattaat
ctatcatcaagagcaatgcaagaattccatggacaaatgcacctatttaagacggaatta
aaacgctgggaaaaaggagatttttctgtcgttattatggcaccagatgaaaaacgtgca
gagaaaatccattctattttgttggattatgaaattgaagctgcagttacagacgattta
aaactccctgttgaggtaccaacgattaccgtgggaaatattacgaatggtattgaattt
ccgatgtataagctggtactcattacagaaaatgaattattcaagaagaagacaaaacga
aatcgaagacagcaaaaaatatcgaatgcggagcgaattaagagctaccaagagttaaag
gtaggcgattatgtcgttcatgcaaaccatggtgttgggaagtaccttgggattgaaacg
ttggaagttaataaactgcataaggattatatgctagttcgttattcgggagacgataag
ctttatgtgccgatcgatcaaatcgatttagttcagaaattcgttggttcggaaggaaaa
gaaccgaagctatataaactaggtggatccgattggacaaaagtaaaacgaaaggttcaa
tcgtctgttgaggatattgctgatgacctaattaagctttatgcagagcgtgaagcaaga
aaaggatatgcattctcagaggatacggaaatgcaacgcgaattcgaagcatccttccca
tatcaggaaacggaagatcagcttcgatgtattgaagaaatcaagcaggatatggaaaga
gaacgtccaatggatcgcttattatgtggtgatgttggctatggtaaaacggaagtagca
atacgtgcagcgtttaaagcaattgctgatggaaaacaagtggcaattcttgtgccgaca
acaattttagctcagcagcactttgaaaccgtccgtgaaaggtttcaggatcatgcgata
aatatcggactcttaagcagattccgtactagaaaagagcaaaccgagacaattaaaggt
ttaaaaatgggaacggtagatattgtaatcggtacacatcgagttctttcaaaagatatt
gagtttcgtgatttaggcttgcttattgttgatgaagaacaacgctttggtgtgaagcat
aaggaaaaaattaaacaaatgaaatccaatgtagatgtgctaactctaactgctacacca
attccgagaacactgcacatgtctatgctaggggtacgggatctttccgttattgaaaca
ccgcctgaaaaccgttttccaattcagacatatgtgatggagtataatccaatcctagta
cgggaagcaattgagcgggaaatggcgagggaagggcaagtattcttcttatataataga
gtagagaatattgataaggtcgctcgtgatattggtatgcttgttgatgatgcgagaatc
gcggtcgctcatggtcaaatgaatgaaaccgaactagaaagtattatttttggcttttta
gaaggtgaatatgatgtgctagttagtacaaccatcattgaaactggtgttgatattccg
aatgtaaacacgttaatcgtaagcaatgcggacaggatggggttaagtcagctttatcag
ctgcgtggtcgagttggtcgttcaaaccgggtggcatatgcttacttcacttatcagaaa
gataaagtactgacagaagtggccgagaaacgactccaagcaattaaggaatttacagaa
ttgggttctggatttaagattgcaatgcgcgacttgtcaattcgcggtgcaggaaaccta
ttaggatcacagcaacatggctttattgattctgttggatttgatatgtattcgcaaatg
ctatccgacgcaattgaagcacgcaaaattgggaaggaaattgaggacattacacctttc
gagcctgagcttgcacttagtgtagatgcatatattccagatgaatatattaaagatgag
aagcaaaagattgatatttataagcaatttagggcacttgattcaaaaaatgatattgaa
gatttaaaggatgaattgattgatcgttttggtgattatccagatgaagttgggaactta
tttattgtaacgatactaaaaatgtacgcaagaaaagaacgagttgagtcgattactgaa
aaagggaataagatcaccttacttatggaggaaaatcgcagccagcaaattgatggctcc
aaattatttgaactcgcaaataaatttggccgtggcgtacaattaggaacagaaaatacg
aagttaaaagttgtattccaatcatcgaaggaaacagagcataacaggtatgacgaagtt
gaagcgtttattaagaaattaaatactgttaaccgcgatgatgcttag
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integrated database retrieval system
