KEGG   Oceanobacillus zhaokaii: CUC15_09560
Entry
CUC15_09560       CDS       T05570                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ocn  Oceanobacillus zhaokaii
Pathway
ocn02024  Quorum sensing
ocn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ocn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CUC15_09560
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CUC15_09560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocn03019]
    CUC15_09560
   03036 Chromosome and associated proteins [BR:ocn03036]
    CUC15_09560
Messenger RNA biogenesis [BR:ocn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CUC15_09560
Chromosome and associated proteins [BR:ocn03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CUC15_09560
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Oscp1 DUF5608
Other DBs
NCBI-ProteinID: AXI09157
UniProt: A0A345PGM7
LinkDB
Position
1898910..1899134
AA seq 74 aa
MAQTVNVQDQYLNQLRKHHISVTVFLTNGFQLRGTVKAFDNFTVLLETDGKQQLIFKHAI
STFAPVKNVSLENE
NT seq 225 nt   +upstreamnt  +downstreamnt
atggcgcaaactgtaaatgtccaagatcaatatttaaatcaattgagaaagcatcatatt
tcagttactgtattccttacaaatggtttccagttaagggggactgtgaaggcttttgat
aacttcacggtattgcttgaaaccgatggtaaacaacagcttatatttaaacatgctatt
tcaaccttcgctccagttaaaaatgtttcattagaaaatgaatag

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