Oceanobacillus zhaokaii: CUC15_13830
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Entry
CUC15_13830 CDS
T05570
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ocn
Oceanobacillus zhaokaii
Pathway
ocn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUC15_13830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocn03019
]
CUC15_13830 (rnr)
03016 Transfer RNA biogenesis [BR:
ocn03016
]
CUC15_13830 (rnr)
Enzymes [BR:
ocn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CUC15_13830 (rnr)
Messenger RNA biogenesis [BR:
ocn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CUC15_13830 (rnr)
Transfer RNA biogenesis [BR:
ocn03016
]
Prokaryotic type
tRNA degradation factors
CUC15_13830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNR_OB1_NT
RNA_pol_Rbc25
CTC1_2
Motif
Other DBs
NCBI-ProteinID:
AXI09942
UniProt:
A0A345PIW2
LinkDB
All DBs
Position
complement(2729720..2731948)
Genome browser
AA seq
742 aa
AA seq
DB search
MKERILTLFKETGTKPLSVEEIEQELEVTDSVEFKELVITLNELEEAGELVRTRKNRFGL
PEKMNLVRGKIQMHAKGFAFLIPDDENGRDVYIHHSDLGSAMNNDRVLVRLEKTEEDGNR
PEGQVIRILERAVLQVVGTYEDNRAFGFVIADDKRIPNDIFIPKGSTNGAVSGHKVIAHI
TKYPEGRMSAEGEIIHILGHKNDPGIDILSIIYKHGITIDFPDEVLEQAANTPETISAEE
LEGRRDLRDEVIVTIDGADAKDLDDAVTVKRLENGNYKLGVYIADVSYYIDEGSPMDNEA
LDRGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLGCEMEITATGEVVNHEIFQSVIK
TTERMTYTEVNKILVDKDVSLRDRYEPLVPMFEEMEELAAILRKKRMTRGAIDFDFKEAQ
VLVDDKGKAVDVVLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIHRIHEDPDEGKLQ
NFFEFLSGLGIKVKGTANDIHPKGLQKIIEDIQGKPEEMIVSKLMLRSMKQAKYDPQGIG
HFGLATEFYTHFTSPIRRYPDLTVHRLIRSYLVNKQLDKKNLSHWKDRLPEIAKHSSEME
RRAVDAERDTDSLKKAEFMKEKIGEEYTGLISSITNFGMFVELENTVEGLIHVSYLTDDY
YHYDERSHALIGERTANVYRIGEEVKVKVVAVNTDEYTVDFELANASGGKSKTRKPRNDR
NERKSNEPSYKKKSTKKKRQRR
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagaatcttaacattatttaaagaaactggcacaaagccattatcagtagaa
gaaattgaacaagaattggaagttaccgattcagttgaatttaaagaattagtaataaca
ctaaatgaattagaagaagctggagaattggttcgaacccgaaaaaatcgctttgggctg
ccagaaaaaatgaatctagtccgtgggaaaattcagatgcatgcgaaggggtttgcattc
ttaattccagatgatgagaacgggcgagatgtatacatccatcattctgatttaggctca
gcaatgaataatgatagagtgttagtacgtttagagaaaacggaagaggatggtaatcgt
cctgagggacaagttatccgtattctagagcgtgcggtgctgcaagttgtgggtacttat
gaagataatcgtgcatttgggtttgtgattgccgatgataagcgtattcccaatgacata
tttatcccgaaaggcagtacgaatggtgcggtaagtggtcataaagtaattgcacatatt
acgaaatatccagaaggaagaatgagtgcagagggcgagattattcatattcttggccat
aaaaatgatccgggaatcgatattttatcgattatttataaacatgggattaccattgat
tttcccgatgaggtgttagagcaagccgcgaatacaccagaaacgattagcgcagaggag
cttgaaggtagacgtgacttgcgtgacgaagtaattgttactatcgacggtgcagatgca
aaggatttagatgatgctgttacggtcaaacgattggaaaatggaaattataagcttggt
gtgtacattgctgacgttagttattacatcgatgaagggtcaccaatggataacgaggca
cttgaccgtggaacaagtgtatatttagttgaccgggtaattccgatgattccacatcgt
ttatcaaatgggatttgttcattaaatccacaggtagacaggttaacccttggctgtgaa
atggaaataacagcaactggtgaagtggtgaaccatgagattttccaaagtgtcattaaa
acaacggaaagaatgacatacaccgaggtaaataaaatattagtagataaagatgtgtct
ctaagagatcgatatgagccacttgttcctatgtttgaagaaatggaagaacttgctgcg
attttgcgtaaaaagcggatgactcgcggtgctattgacttcgattttaaagaggcacag
gtccttgtcgatgataaagggaaagcagtggatgttgtcttacgagaacgctctgtcgca
gaacgtcttatcgaagaatttatgctagcagcaaatgaaacagttgcagaacatttccat
tggatggacgtgcccttcattcaccggattcatgaagacccagatgaaggaaagctgcaa
aacttctttgaattcttaagtgggttaggaattaaagttaaaggaacagcaaatgatata
catccaaaaggtttacaaaagataatcgaggacatccaaggtaaaccggaagaaatgatt
gtttcgaagctcatgcttcgttcgatgaagcaggcaaagtatgatccacaaggtataggg
cactttggacttgcaactgaattttatacgcatttcacatcaccgattagaaggtatccc
gatttgactgtccatcgtttaattcgcagctaccttgtaaataagcagctggataagaaa
aaccttagccactggaaggacagattaccagagattgccaagcattcatcagagatggag
cgtcgggctgtcgatgcagagagagatacagatagcttgaagaaagccgagtttatgaaa
gaaaaaatcggcgaagagtatactggtttaataagctcaatcaccaatttcggtatgttc
gttgaactggaaaatacggtagaaggtcttattcatgtcagttatttgactgatgattac
taccattatgatgaacgcagccatgcattgattggtgaacgaacagcaaatgtttatcga
attggggaagaagttaaggttaaagtcgtcgcagtcaacacagatgaatataccgttgac
tttgaattagctaatgccagtggcggaaagtcgaaaacccgtaagccacgtaatgaccgt
aatgaaagaaaatcaaatgaaccatcatataagaaaaagtcaacgaaaaagaaaagacaa
agaaggtga
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