Oceanobacillus zhaokaii: CUC15_17620
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Entry
CUC15_17620 CDS
T05570
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ocn
Oceanobacillus zhaokaii
Pathway
ocn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUC15_17620 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocn03021
]
CUC15_17620 (rho)
03019 Messenger RNA biogenesis [BR:
ocn03019
]
CUC15_17620 (rho)
Transcription machinery [BR:
ocn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CUC15_17620 (rho)
Messenger RNA biogenesis [BR:
ocn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CUC15_17620 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
AAA
ATPase_2
Spore_III_AA
AAA_24
NB-ARC
AAA_23
Mor
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AXI10646
UniProt:
A0A345PKW6
LinkDB
All DBs
Position
complement(3599891..3601171)
Genome browser
AA seq
426 aa
AA seq
DB search
MSALTISQLEVLTLKELYSLAKEYKVSYYAKLTKKELIFAILKAQAEKDGFLFMDGVLEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNSEDPETSKERVHFPGLTALYPNRFMKLETETNQLSTRIIDLMTPVGFGQRGLIVAPPK
AGKTTLIKEIANSITVNHPEAKLIILLVDERPEEVTDIERSVAKDVDVVSSTFDEVPENH
IKVSELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRNLSDRRIFPAID
ILRSGTRKEELLVSKDQLDKMWAIRKTMQDSQNFLERFLRKLKSSKSNEEFFVQMDEEMK
RKGIKK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcattaacaatctctcaattagaggtattaacattaaaagaactttattcatta
gcgaaagaatataaagtctcttattatgcaaaactaacgaaaaaagaacttatatttgca
attttaaaagcacaggcagaaaaagatggcttcttatttatggatggtgtgttagaaatt
atcccctcagaaggatttggcttcttaagaccaattaattactctccaagtgccgaagat
atttacatttctgcttcacaaattcgccgctttgatcttaggaacggtgataaagtatca
gggaaggtacgcccgccgaaagaaaacgagcgttattatggcctgttgcatgttgatgca
gtaaatagcgaagaccctgaaacatcgaaagaacgcgttcattttcctggactaacagca
ttgtatccaaaccgttttatgaaattagaaacggaaacgaatcagctttccacgcggatc
attgatctaatgacgccggttggatttggccaacgtggtctaattgttgcaccacctaaa
gctgggaaaactacgttaatcaaggaaattgctaacagtattaccgttaaccatccagaa
gcaaaattaattattttacttgttgatgaacgtccagaagaggtaactgatattgaacgt
tcagttgcgaaggatgttgatgttgtaagctccacctttgatgaggttccagaaaatcat
attaaagtgtctgagctcgtgctggaacgtgcgatgcgattagtagagcataaacgtgat
gtcattattttgatggatagtattactaggcttgcacgtgcttataacttggttattcca
ccaagcggtcgtacgctttcaggtgggattgatccagctgcattccaccgtccgaaacga
tttttcggagctgcaagaaacattgaagagggcggaagctttacgatattagcaacagct
ttagttgatactggctcgcgtatggatgatgtcatttatgaagaatttaaaggtacagga
aatatggaactgcacttagaccgtaatttatcggatcgcagaattttccctgctatcgat
attctgcgatccgggacgcgtaaagaggaattacttgtttctaaagatcagcttgataag
atgtgggcaattcgtaagacaatgcaggattcacaaaacttcttggaacgattcctaaga
aagctaaaatcatcgaagagcaatgaagaattctttgtgcaaatggatgaggaaatgaag
cggaaaggaatcaagaaatag
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