Oceanobacillus zhaokaii: CUC15_19030
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Entry
CUC15_19030 CDS
T05570
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ocn
Oceanobacillus zhaokaii
Pathway
ocn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUC15_19030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocn03019
]
CUC15_19030
03009 Ribosome biogenesis [BR:
ocn03009
]
CUC15_19030
Enzymes [BR:
ocn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUC15_19030
Messenger RNA biogenesis [BR:
ocn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUC15_19030
Ribosome biogenesis [BR:
ocn03009
]
Prokaryotic type
rRNA helicases
CUC15_19030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXI10893
UniProt:
A0A345PLL3
LinkDB
All DBs
Position
complement(3901122..3902570)
Genome browser
AA seq
482 aa
AA seq
DB search
MTQERFTDYKLSTDITNALNGLGYTLPTEVQRKVIPLVLEQKDLVTKSQTGSGKTASYGI
PICELVEWIENKPQALVLTPTRELAVQVKDDLTDIGRFKRIKATAVYGKQPIAIQKTELK
QKTHVVVGTPGRVLDHIERDTLPLDKIRYLVIDEADEMLNMGFIEQVETIINKLPRERVT
LLFSATLPEKVKNLASNYMKDPIDIEIKATGLTTENIEHFLYEVPEKDKFQLLTNVTIIE
NPDSCIIFCRTKDRVDTVCQELDDLGYSCDKIHGGMEQDDRLAVMNDFRRGEFRYLIATD
VAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGLSGKAISFVTPFEGRFLNEVEEY
IGFKIPARLAPLKEEVAINKAAFETKMKKQPTIKKSKSENLNKQIMKLYFNGGKKKKLRA
VDFVGTIAKIDGVSAEDIGIITIQDTASFVEILNGKGPLVLQTMKDTKVKGKLLKVYEAN
KK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagagcgtttcacagattacaaattaagtacagacataacgaatgcattaaat
ggtttaggatataccttaccaacagaggttcagcgcaaggttattccactcgtgctagag
cagaaagatcttgtgactaaatcgcaaacaggaagcgggaagacagcgtcttatgggatt
cccatttgtgagctggttgaatggatagaaaacaagccacaggcactggtcttaactccc
acgagagaactcgctgttcaagtgaaagacgatctgacagatatagggcgatttaagcgg
attaaagcaaccgctgtttatggcaagcaaccgattgccatccaaaagacagaattgaaa
caaaagacccatgttgtcgttggtacccctggccgtgtgttggatcacattgaaagggat
acacttccgttagataagatccgctaccttgtaatagatgaagcggatgaaatgttaaat
atgggatttattgaacaggtagagacaattattaataagctgcctagagaaagagtaaca
ctcctattctcagcgactcttcctgagaaggttaagaacttagcaagcaattatatgaaa
gacccaatcgatatagaaattaaagcaactgggcttacgacagaaaacattgagcatttt
ctttatgaagtcccagaaaaagataaattccaactgcttacgaacgttacgattattgaa
aacccggatagctgcatcatattttgtcgaacaaaagacagagtagacacagtatgtcaa
gagttagatgatttagggtatagctgtgacaaaatccacggaggaatggaacaggacgac
cgattggcagtaatgaatgactttagaaggggagaattccgctatttaattgcgactgat
gtggctgcaaggggaattgatattgataatattacccatgttattaattatgacatccca
ttagaaaaagaaagttatgttcatcgtacaggaagaacgggacgagcgggactaagtgga
aaagcaatttcattcgtaacaccgtttgaaggtcgcttcttgaatgaggtagaggaatat
atcggtttcaagattccagctagacttgcaccattaaaagaagaagtcgctattaataaa
gctgcctttgaaacaaaaatgaaaaaacagccaacgattaaaaagtccaaaagtgaaaat
ctaaataaacaaattatgaagctatactttaatggcggaaagaaaaagaagctaagagca
gttgacttcgttggtaccattgcaaaaatagatggtgtatcggcagaggacatcggtatt
attacaatccaggatacagcatcttttgtcgaaatattaaatggcaagggtccactcgta
ttacaaacgatgaaggataccaaggtaaaaggtaaattactcaaggtttatgaagcgaat
aagaagtaa
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