Afipia carboxidovorans OM4: OCA4_c00050
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Entry
OCA4_c00050 CDS
T01967
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oco03032
]
OCA4_c00050 (gyrB)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c00050 (gyrB)
Enzymes [BR:
oco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
OCA4_c00050 (gyrB)
DNA replication proteins [BR:
oco03032
]
Prokaryotic type
DNA Topoisomerases
OCA4_c00050 (gyrB)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OCA4_c00050 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AEI01165
LinkDB
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Position
4826..7264
Genome browser
AA seq
812 aa
AA seq
DB search
MSEPARLPTPDLTVAAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN
AIDEALAGYATRVEVILNPDGSVTVRDDGRGIPTDIHKGEGISAAEVIMTQLHAGGKFDQ
NSYKVSGGLHGVGVSVVNALSSKLALRIWRGGKEHYIEFQHGDAVAPLAVVGDAGGKRGT
EVTFHASPETFTHIEYDFDTLEHRLRELAFLNSGVNILLSDMRHAVERREELHYEGGVEA
FVKFLDRNKKAVVDKPIVMRAEQHGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAG
FRGALTRQITGYAEGMAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVR
PVVESIINTALSAWLEEHPTEARTIVGKVIEAAAAREAARKARDLTRRKGALDIASLPGK
LADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQ
IGTLITALGTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPQLIEAGH
LYIAQPPLYKVTRGKSEQYLKDERALEDYLIETGLDDCVLRLATGEERKGRDLQALVEDA
RTIRGLLANIHSRYNRSVVEQAAIAGVLNARVTGNPETARDAADYIAKRLDALADEVERG
WSGTFTEGQGFLFERTVRGVKEVATIDDALLSSAEARRLDDFAAALQETFPRSAILRRKD
TETAIHGPVSLFEAVTEAGRKGVAYQRYKGLGEMNPEQLWETTLDTNARSLLQVKIREVD
AADDIFTKLMGDIVEPRREFIQDNSLDANVDV
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacccgcccgtctgccgacccccgacctcacggtcgcggctgctgaatatggc
gccgaatcgatccgggtgctgaagggcctcgatgccgtgcgcaagcgccccggcatgtac
atcggcgacaccgatgacggctccggtttgcatcacatggtctacgaggtcgtcgacaac
gcgatcgacgaagcgctcgcgggctatgccacgcgcgtcgaagtgatcctcaatccggac
ggctcggtgacggtgcgcgacgacggacgcggcattccgaccgacatccacaagggcgaa
ggcatctccgcggccgaggtcatcatgacccagctccacgccggcggaaagttcgaccag
aattcctacaaggtctccggcggcctgcacggcgtcggcgtctcggtcgtcaacgcgctg
tcgagcaagctcgcgctgcggatctggcgcggcggcaaggaacactacatcgaattccag
cacggcgacgcggtggcgccgctcgccgtggtcggcgatgccggcggcaagcgcggcacc
gaagtcaccttccatgcctcgcccgagaccttcacccatatcgaatatgatttcgatacg
ctggagcatcgcctgcgcgagctcgcgttcctcaattccggcgtcaacatcctgctctcc
gacatgcgccacgcggtcgagcggcgcgaagagctgcattacgagggcggcgtcgaggcg
ttcgtgaaatttctcgaccgcaacaagaaggcggtggtcgacaaaccgatcgtgatgcgc
gccgaacagcatggcatcaccgtcgaggtcgcgatgtggtggaacgacagctaccacgag
aacgtgctgtgcttcaccaacaacattccccagcgcgacggcggcacgcatctcgcgggc
ttccgcggtgcgctgacgcgccagatcaccggctatgccgagggcatggcgaagaaggaa
aagatcgcactcaccggcgacgattgccgcgaaggcctcactgccgttctgtcggtgaag
gtgccggacccgaaattttcctcgcagaccaaggacaagctcgtgtcctccgaggttcgc
ccggtggtcgagagcatcatcaacaccgcgctttcggcgtggctggaagagcatcccacc
gaggccagaaccattgtcggcaaggtgatcgaggccgcggccgcgcgcgaggctgcgcgc
aaggcccgcgatctcacccgccgcaagggtgcgctcgatatcgcctcactccccggcaag
cttgccgactgtcaggagcgcgatccggcgaagtccgaactcttcatcgtcgagggcgat
tccgcgggcggctccgccaagcagggccgcaatcgcgaattccaggcggtgctgccgctg
cgcggcaagattctcaacgtcgagcgcgcgcgcttcgacaagatgctgtcgtcggagcaa
atcggcacgctgatcaccgcgctcggcaccggcatcggccgcgacgacttcgatctgtcc
aagctgcgctatcacaagatcatcgtgatgacggacgccgacgtcgacggcgctcacatc
cgcacgctgctgctgacgttcttcttccggcagatgccgcaactgatcgaggcgggccat
ctctacatcgcccagccgccgctctacaaagtaacgcgcggcaagtccgagcagtatctc
aaggacgagcgcgcgctcgaggattatctgatcgagaccggcctcgacgattgcgtgctg
cggctcgcgaccggcgaggaacgcaagggccgcgacctgcaggcgctggtggaggatgcc
cgcaccatccgcgggctgctcgccaacattcactcgcgttacaaccgcagcgtggtcgag
caggcggcgattgccggcgttctcaacgcgcgcgtcaccggaaatccggagacggcacgg
gacgccgccgattacatcgccaagcgcctcgatgcgcttgccgacgaagtcgagcgcggc
tggagcggcaccttcaccgaaggccagggcttcctgttcgagcgcaccgtgcgcggcgtc
aaggaagtcgccaccatcgacgacgcgctgctgtcctcggccgaagcccgcaggctcgac
gatttcgctgccgcgctgcaggaaaccttcccgcgtagcgcgatattgcgacgcaaggac
accgagacggcgattcacgggccggtcagcctgttcgaggcagtaaccgaagccggccgc
aagggtgtcgcctaccagcgctacaaaggtctcggcgagatgaaccccgagcagttgtgg
gagaccacgctcgacaccaacgcccgttcgctgctgcaggtgaaaatccgcgaggtcgat
gccgccgacgacatcttcaccaagctgatgggcgacatcgtcgagccgcgccgcgaattc
atccaggacaactcgctcgacgccaacgtcgacgtctga
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