Afipia carboxidovorans OM4: OCA4_c00290
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Entry
OCA4_c00290 CDS
T01967
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oco03016
]
OCA4_c00290 (truB)
Enzymes [BR:
oco01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
OCA4_c00290 (truB)
Transfer RNA biogenesis [BR:
oco03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
OCA4_c00290 (truB)
Prokaryotic type
OCA4_c00290 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AEI01189
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All DBs
Position
31795..32874
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AA seq
359 aa
AA seq
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MSPTGQNPANAPQTGESIAADQNNFSTPPNGGHPHGKGQRGQRQQKRERRDVHGWVVLDK
PVGMTSTQAVAVLKRLFNAKRVGHAGTLDPLASGGLPIALGEATKTVPFVMDGRKRYRFT
VQWGEERDTDDSEGRPTQTSDARPTPEAIQAVLPQFSGTILQTPPQFSAIKIQGERAYDL
ARDGETVALQPREVEIHELILVDQPDSGHSVFEAECGKGTYVRALARDMGRLLGCYGHIV
ALRRTQCGPFDEADMIPLAELEALCDRAASGEGSLADALLPVETALDDIPALAVTRADAA
RLARGQAVLLRGRDAPILNGTVYVTVGGRLLALAELGNGELIPKRVFNLTGLVASPDRN
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgacaggccagaatcccgcaaacgcgccgcaaaccggcgagtccatcgccgcc
gatcaaaataatttttccacgcctcccaacggcggacatccgcacggcaagggacaacgc
ggccagcgccagcagaagcgcgaacgccgcgacgtccatggctgggtcgtgctcgacaag
ccggttggaatgacctcgacccaggcggtggcggtgctgaagcgtctgttcaacgccaag
cgtgtcggccatgccggcacgctcgatccgctcgcctccggcggtctgccgattgctctt
ggggaagcgaccaagaccgtccccttcgtgatggatggccgcaagcgctaccgcttcaca
gtgcagtggggcgaggagcgcgacaccgacgacagcgaaggccgcccgacccagaccagc
gacgcccgcccgacccccgaggcgatccaggccgtgctgccgcagttcagcgggaccatc
ctgcagaccccgccgcagttctcggcgatcaagatccagggcgagcgcgcctatgacctc
gcccgcgacggcgaaaccgttgccttgcagccccgtgaggtcgaaattcacgaattaatc
cttgtcgatcagccggatagcggccactccgtgttcgaggccgaatgcggcaagggaacc
tatgtccgggcgctcgcccgcgacatgggccgcctcctcggctgctacggccacatcgtg
gctctgcggcggacccagtgcggcccgttcgacgaggctgacatgattccgctggcggaa
ttggaggctttgtgcgatagagccgcgtctggcgagggcagcctcgccgacgcgctattg
cccgttgagaccgcgctggacgacatcccggcactggccgtcacacgggcggatgccgca
aggcttgcaagaggccaagcggttttgttgcgcggacgggatgcgccaattctcaacggc
acagtctatgtcactgtcggaggacggcttctggccctcgccgagcttggcaatggcgaa
ctcatccccaagcgcgtgttcaacctcaccgggctcgttgcgagtccggaccgcaattaa
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