Afipia carboxidovorans OM4: OCA4_c00310
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Entry
OCA4_c00310 CDS
T01967
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCA4_c00310 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oco03019
]
OCA4_c00310 (pnp)
03016 Transfer RNA biogenesis [BR:
oco03016
]
OCA4_c00310 (pnp)
Enzymes [BR:
oco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OCA4_c00310 (pnp)
Messenger RNA biogenesis [BR:
oco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OCA4_c00310 (pnp)
Transfer RNA biogenesis [BR:
oco03016
]
Prokaryotic type
tRNA degradation factors
OCA4_c00310 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
Tricorn_2nd
Motif
Other DBs
NCBI-ProteinID:
AEI01191
LinkDB
All DBs
Position
33446..35590
Genome browser
AA seq
714 aa
AA seq
DB search
MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT
VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH
DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA
GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDVVATVNAD
LEKEILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEGIEPRYEKLRVLDVFKD
LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG
EDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH
EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAK
ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS
ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAASRV
QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDLEAKQKAENAPAAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacacccattccgtcgaactcgactggggcggacgcccgctcaagctcgaaacc
ggcaaagtcgcgcgtcaggccgacggcgccgtgatcgcgacctacggcgagaccgtggtg
atggcgactgtcgtctccgccaagaccccgaaggaaggcatcgacttcctgccgcttacc
gtcaactaccaggaaaagacctacgccgcgggccgcatccccggcggttacttcaagcgc
gaaggccgtccctctgagaaggaaacgctggtctcccgcctgatcgaccgtccgatccgt
ccgctgtttgctgacggttatcgctgcgacacccaggtgatcgtcaccacgctgtcgcac
gatatggagaatgatcccgatatcgtggcgatggttgccgcctcggctgcgctgacgctc
tccggcgtgccgttcatgggcccggtcggcgccgctcgcgtcgccttcgtcaacaacgag
ttcatcctcaatccgacgctcgatgagatggtcgacacccagctcgacctcgtcgttgcc
ggcaccgcgaccgcagttctgatggtggaatcggaagccaaggaattgccggaagaaatc
atgctcggcgccgtgatgttcggccacaagcacttccagccggtgctcaaggcgatcatc
gaactggccgagcaggccgccaaggagccgcgcgacgtcgtcgccaccgtcaacgccgat
ctcgagaaggaaatcctcggcatcgtcgagcaggacctgcgcaaggcctacagcattccg
gtgaagcaggatcgctacgccgctgtcggcgccgcgaaggacaaggtgctcgagcacttc
ttccccgaaggcatcgagccgcgctacgagaagctccgcgtcctcgacgtgttcaaggac
ctcgaagccaagatcgttcgctggaacatcctcgataccggccgccgcatcgacggccgc
gacctcaagaccgtgcgcccaatcgtggcggaagtcggcgtgctgccgcgcgcccacggc
tcggcgctgttcacccgcggcgagacccaggcgctggtcgtcaccacgctcggcaccggc
gaggatgaacagtacatcgactcgctcgcaggcacctacaaagagacgttcctgctgcac
tataacttcccgcccttctccgtcggtgagacgggccgcatcggttcgccgggccgccgc
gaaatcggccacggcaagctcgcctggcgcgcaatccatccggtcctgccggcgcatcac
gagtttccgtacacgctgcgcgtcgtctcggagatcaccgagtcgaacggctcctcgtcg
atggcgaccgtgtgcggctcctcgctcgcgttgatggatgccggcgtgccgctgaagcgg
ccgaccgcgggcatcgcgatgggcctgatcctcgagggcgaccgctttgcggtgctctcc
gacattctcggcgacgaggatcatctcggcgacatggacttcaaggtggctggcaccgag
aagggtgtcacctcgctgcagatggacatcaagatcgccggcatcaccgaagagatcatg
aaggtggcgctgacgcaggccaaggacggccgcatgcacattctcggcgagatggcgaag
gctctcaccgccgcgcgtgcggagctcggcgagcatgcgccgcgcatcgaggtgctgcag
atcccgaccgacaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaagatcaacatcgaggacgacggcaccgtgaaggttgcctcc
gccaacggtgaatcgatccgcgccgcgatcaagtggatcaagtcgatcacctcggaaccg
gaagtcggccagatctacgacggcaccgtggtcaaggtgatggagttcggcgcgttcgtg
aacttcttcggcccgaaggacggccttgttcacatcagccagcttgcggcgagccgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcctc
gacgatcgcggcaaggtgcggttgtcgatgaaggcggtcgatcagaccaccggcgaggac
ctagaggccaagcagaaggccgagaacgcccctgccgccgagtaa
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