Afipia carboxidovorans OM4: OCA4_c00780
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Entry
OCA4_c00780 CDS
T01967
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oco03016
]
OCA4_c00780
Enzymes [BR:
oco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OCA4_c00780
Transfer RNA biogenesis [BR:
oco03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OCA4_c00780
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AEI01237
LinkDB
All DBs
Position
complement(86731..87345)
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AA seq
204 aa
AA seq
DB search
MTIRLHRGDLPDLSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTDA
PNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDLV
RELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKSC
FEFLPTRARLDLQGWDETDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcggctgcatcgcggcgacctgccagacctttcgcgctacacccattcggtt
gcgatcgataccgagacgctcggtctcaatccgcatcgcgaccggctatgcgtggtgcag
ctctcgaatggcgacggcaccgccgatgtcgtgcagattccggccggtcacaccgatgcg
ccgaatttgaagaagctgcttgccgaccccatggtcaccaagctgtttcatttcgcccgg
ttcgatatcgcggtgctggagcatgctttcggcgtgatgacgcagccgatctactgtacc
aagattgcttcgaagctggtgcgcacctacaccgaccgccacgggctgaaggatctggtg
cgcgagcttctgggcgtcgagatttccaagcagcagcagtcgagcgactggggtgcagaa
aagctgtcggaagcccagctcacctatgccgcctccgatgtgctgcatctgcatgcgctg
cgcgagaagctcgacaccatgctggcgcgcgagaaccgcatggacctcgccaaatcctgc
ttcgagttcctgccgacccgggcgcggctcgacctgcagggctgggacgagaccgacatc
tttgcgcattcgtaa
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