Afipia carboxidovorans OM4: OCA4_c02540
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Entry
OCA4_c02540 CDS
T01967
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase DapF
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco00300
Lysine biosynthesis
oco00470
D-Amino acid metabolism
oco01100
Metabolic pathways
oco01110
Biosynthesis of secondary metabolites
oco01120
Microbial metabolism in diverse environments
oco01230
Biosynthesis of amino acids
Module
oco_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
OCA4_c02540 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
OCA4_c02540 (dapF)
Enzymes [BR:
oco01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
OCA4_c02540 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
AEI01409
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Position
269861..270733
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AA seq
290 aa
AA seq
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MTVLANHSFAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPG
TTAFVRIYNNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTV
DMGTPKFGWQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDDIEAYD
LERLGPLLENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARL
KRTDRTVEMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFDPDLFAALA
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgcttgccaatcatagcttcgccaagatgaacggaatcggaaacgagatcgtg
attgtcgatctgcgtaacaccgattcacaactcagtgcggcagaagcccgcgccatcgcg
gctccaggcggcgtgccctacgaccaattgatggtgctgcagaagccgcggatgcccggc
accacggccttcgtgcgcatctacaataatgatggctccgaggcgggcgcctgcggcaac
ggcatgcgttgtgttgcaaagcgcgtgttcggcgaaagcggcgcgcaggccgcgaccttc
gagacgcgcgcgggactgttgaactgctggcagggtccgtcacctgatctttacacggtc
gacatgggcacgccgaagttcggctggcaggatattccgcttgccgaagaattccgcgac
acccgctacatcgaattgcagatcgggccgatcgatgcgccggtgctgcattcgccttcg
gtcgtcagcatgggcaatccgcacgcgatcttctgggtcgatgacatcgaggcctacgat
ctcgaacggctcgggccgcttctggaaaatcacccgatctttccggagcgcgccaacatc
acgcttgcccatgtcgtggatcgcaatcacatccggatgcggacgtgggagcgcggcgcg
ggcttgaccctcgcgtgcggctcggccgcgtgcgccaccgcggtcgccgcggcgcgactg
aagcgcaccgatcgcaccgtggagatgagtctgccgggcggcgatctcaccatcgaatgg
cgtgagagcgacgatcatgtgctgatgaccggcgccgcggtgctggaatatgaagggctg
ttcgacccggacctgttcgcggcgctcgcctga
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