Afipia carboxidovorans OM4: OCA4_c03000
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Entry
OCA4_c03000 CDS
T01967
Name
(GenBank) putative methylase/helicase
KO
K26273
protein strawberry notch
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oco03036
]
OCA4_c03000
Chromosome and associated proteins [BR:
oco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
OCA4_c03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
MTS
UPF0020
Motif
Other DBs
NCBI-ProteinID:
AEI01455
LinkDB
All DBs
Position
309748..314079
Genome browser
AA seq
1443 aa
AA seq
DB search
MTLALTSAAADAAASPPVVPVPAAEVAAFGAALRLLTHLERGERIDAAALRSAMEAAFGA
SDTTGAWIWKTAYDACEAATVLFLQKYGKALFRKAASPAARLSAITKITGLLPTHTRRSE
ESQALQQFSTPTPLGLAAVTAAAIAPGDLVLEPSAGTGLLAILAQISGGELLLNELSDAR
ANLLAALFPAIAVSRFDAAQIDDHLPPTHAPAVVIMNPPFSAMAHVSGRMSDAAYRHVAS
ALARLADGGRLVAITGANFGPEIPAWTDAFRRLQKCGRVVFTAAIDGSVYARHGTTIETR
LTVIDKLPADDPAVFPASAGVAPDVATLLGWVEAQVPSRLAAATPSAPPAGPAAPPRIVR
GYLARASAARPAASLAIEPEGAELAYETVDWTPPEGARLTEAIYEEYGLQSIRIPGAQAH
PTKLVQSAAMASIAPPKPSYRPMLPANICDLLSDAQLETVIFAGEAHSDFLAGSWTVDET
FDLVKAAPPDAENALRFRRGYMLGDGTGAGKGRQSAGIILDNWLRGRRKAVWVSKSDKLI
EDAQRDWSALGMERLLVTPLSRFPQGKPITLSEGILFTTYATLRSDDRGEKVSRVRQIVD
WLGSDFDGAIIFDEAHAMQNAAGGKGERGDVAASQQGRAGLRLQHALPNARVTYVSATGA
TTVHNLAYAQRLGLWGGEDFPFATRAEFVEAIEDGGVAAMEVLARDLRSLGLYTARSLSY
DGVEYELIEHQLTGEQRGIYDAYAGAFAVIHNNLDAAMQAANITGSDGTLNKQAKSAARS
AFESAKQRFFGHLLTSMKTPTLIRSIEGDLDAGHAAVIQIVSTGEALMERRLAEIPTDEW
NDVRVDITPREYVLDYLAHSFPVQLYEPFTDSEGNLSSRPVYRDGQPVESREAVARRNDL
IERLASLPPVPGALDQIVQRFGTETVAEVTGRSRRIVRKGHRLVVENRAPSANLAETSAF
MDDQKRILVFSDAGGTGRSYHAALSARNQRLRVHYLLEPGWKADAAIQGLGRTNRTNQAQ
PPLFRPIATDVQAEKRFLSTIARRLDTLGAITRGQRQTGGQGLFRPEDNLESTYARDALR
QLYLQIVRGKVEGCSLQRFEDATGLKLMDANGIKDELPPITTFLNRLLALTIELQGILFT
AFELLLEAKVAGAIASGVYDIGLETLTAESFVVTKRTTIYTHPATGAEARLLSLVERRRN
RPTSTESALAWLDDPHARLLVNERSGRAAVQIPAPSLMLDDGEIESRVRLIRPMEQHHAS
LKMMADSHWREVDREAFAAIWQREVSEVPTFAESTIHMVSGLLLPVWKRLPNESTRVYRL
QTDDGERIIGRRVSPAWAANAASTGATNLGVEDAYAALIDGRTILDLAEGLQLRRARVMG
ANRIELSGFTDAMRDRLRSYGLYSEIISWKLRFFVPVDATGPTILGKLLDTYPLSRISER
EAA
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggctttgacatcagcggcggccgacgccgccgcatcccctcctgtcgttccc
gttcctgcagcagaggtcgccgcgttcggcgcggccctgcgtcttctgacccacctcgag
cgaggcgagcgcatcgacgccgctgcgctacgcagcgcgatggaagcagcgttcggcgcg
tcggacacgaccggcgcctggatctggaagacggcctatgacgcctgcgaggctgcgacc
gtcctcttccttcagaaatacggcaaggcgcttttccgcaaagccgcttctccggctgca
cggctttccgccatcacgaaaatcaccggcctcctgccgacgcacacgcgccgctccgag
gaaagtcaggcattgcagcaattttcgacgccgacgccgcttgggctcgccgccgtgacc
gcggccgccattgcgccgggcgacctcgtgcttgagccgtcggccggcaccgggctgctc
gcaatcctcgcccagatcagcggcggcgaacttctcctcaacgagctgtccgacgcccgc
gccaatctgctcgccgctctcttcccagccatcgccgtctcgcgtttcgacgcggcccag
atcgacgatcatctcccgccgacccacgcgcccgccgtcgtcatcatgaacccgccgttc
tcggccatggcccatgtctccggccgcatgagtgatgccgcctatcggcatgtcgcctcg
gccctggcgcgtctcgccgacggcggccggctggtcgccatcaccggcgcgaacttcggg
cccgaaatcccggcctggaccgacgctttcaggcggctccagaagtgtggccgcgtcgtc
ttcaccgcagcgatcgacggctcggtctacgctcggcacggcacgacgatcgagacccgg
ctgaccgtcatcgacaagctcccggctgacgatccggccgtcttcccggcctctgcgggc
gttgcgcccgatgtcgcgactctgctcggctgggtcgaggctcaggtcccctcacgcctc
gctgccgctacgccgtcagccccgcctgccggtccggccgctccaccgcgcattgtgcgc
ggctatctcgcgcgcgcctcggcggctcgcccagccgcgtcgctcgccattgagccggag
ggggccgaactcgcctatgagaccgtcgactggacgccgcccgagggcgcgcgtctcacc
gaggcgatctacgaagaatacgggttgcagtcgatccgcatccccggcgcacaggcgcat
ccgaccaagctcgtgcagtcggcggccatggccagcatcgcgccgcccaagccgagctac
cggccgatgctgccggcgaacatctgcgatctcctgtccgacgcccagctcgaaaccgtc
atcttcgccggcgaagcccattccgacttcctcgccggatcatggacggtcgatgagacc
ttcgatctggtgaaggctgctccccccgacgccgaaaacgccttgcgcttccggcgcggc
tacatgctcggcgacgggaccggcgccggtaagggccgccaatcagcgggcatcatcctc
gacaactggctgcgcggccgccgcaaggcggtctgggtctcgaaatccgacaagctgatc
gaggacgcgcagcgcgactggtcagcgctcggcatggaacggctgctggtcacgcccctc
tcgcgcttcccgcagggcaagcccatcaccctgtcggaaggcatcctatttacgacctac
gccacgctacgctccgacgaccgcggcgagaaggtttcgcgcgtccggcagatcgtcgat
tggttgggctccgatttcgatggagccatcatcttcgacgaggcgcacgccatgcagaac
gccgctggcggcaagggagaacgcggcgatgtcgccgcctcgcagcagggccgcgcaggc
ttgcgcctccagcacgccttgccgaacgcgcgcgtgacctatgtctccgccaccggcgcc
accacggtccacaacctcgcctatgcgcagcgcctcggcctctggggcggcgaggacttc
cccttcgccacccgcgccgaattcgtcgaagccatcgaggacggcggcgtggcggccatg
gaggtgctcgcgcgcgatctgcgttcgctcgggctctacaccgcccggtcgctctcctat
gacggcgtcgaatacgagctgatcgaacaccagctcaccggcgaacagcgcggcatctac
gacgcctacgccggagccttcgcggtcatccataacaatctcgatgcggcgatgcaggcc
gccaacatcaccggcagcgacggcacgctgaacaagcaggccaagtccgccgctcgctcg
gcattcgagtccgccaagcagcgcttcttcggccatctgctcacgtcgatgaagacgccg
acgctgatccgttcgatcgaaggcgatctcgatgcgggccatgctgccgtgattcagatc
gtctcgaccggcgaagccttgatggaacgtcggctggcggagattccgaccgatgaatgg
aacgacgtgcgcgtggacatcacgccgcgggaatacgtcctggactatctcgcccattcc
ttcccggtgcagctctacgagcccttcaccgactcggagggcaatctgtcgtcgcgtccc
gtctatcgggatggccagcctgtcgagagcagggaagccgtcgcccgtcgcaacgatctg
atcgaacggctcgcatcgctcccgccagtccctggcgcgctcgaccagatcgtgcagcgt
ttcggaacggagacggtcgcggaggtgacgggccgatcgcggcgcatcgtgcgcaagggc
catcgcctcgtcgtcgagaaccgcgcgccatcggcgaacctcgccgagaccagcgccttc
atggacgatcagaagcgcatcctcgtcttctcggacgcgggcggcaccgggcgtagctat
cacgccgcactctccgcgcggaatcagcgcctgcgcgttcactatctattggaaccgggc
tggaaggcggacgccgccattcagggcctcggtcgcaccaaccgcaccaaccaggcgcag
ccaccgctgttccgaccgatcgccacggatgtgcaagcggagaagcgcttcctctccact
atcgcccgccgcctcgacacgctgggcgcgatcacgcgcggccagcgccagaccggcgga
cagggcctgttccggcccgaggacaatctggaatcgacctacgcgcgcgatgcccttcgc
cagctctatctccagatcgtgcggggcaaggtcgagggctgctcgctccagcgtttcgag
gacgccaccggcctgaaactgatggatgccaacggcatcaaggatgagttgccgccgatt
acgaccttcctcaaccggctgctcgccctcaccatcgagctgcaaggcatcctgttcacc
gccttcgaacttctgctcgaggcgaaggtggcgggcgcgatcgccagtggtgtctatgac
atcggactggagacgctgacggcggagagcttcgtcgtcaccaagcggaccaccatctac
acccatcccgcgacgggggcggaagcgcgtcttctcagccttgtcgagcgccgccgcaat
cggccgacgtcgacggagagcgcgctggcttggctggacgatccgcatgcccggctgctc
gtgaatgagcgctctggccgagccgccgtacagattccggcgccgtcgctcatgctcgat
gatggcgagattgaaagccgcgtgcggctgatccggccgatggagcagcatcacgcctcg
ctgaaaatgatggccgacagccactggcgggaggtcgatcgcgaggccttcgccgccatc
tggcagcgcgaggtgtcggaggtcccgactttcgccgagagcacgatccatatggtcagc
ggcctgttgctgcccgtctggaagcgcctgcccaacgagtcgacgcgcgtctatcgcctt
cagaccgatgacggcgagcgcatcatcggccgacgcgtctcaccggcctgggccgccaac
gctgcctcgaccggcgcgaccaacctcggcgtggaggacgcctatgcggccctgatcgac
ggccgcaccattctcgaccttgccgaaggccttcagcttcgccgtgcccgtgtcatgggc
gcgaaccgcatcgaactctccggattcacggacgcgatgcgcgaccggctgcggagctac
gggctgtatagcgagatcatctcgtggaagctgcgcttcttcgtgcccgtcgacgctacc
ggcccgaccatcctcggaaagctgctcgacacctatccgctgtcgcgcatctccgagcgg
gaggcggcatga
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