Afipia carboxidovorans OM4: OCA4_c05740
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Entry
OCA4_c05740 CDS
T01967
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03030
DNA replication
oco03410
Base excision repair
oco03420
Nucleotide excision repair
oco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OCA4_c05740 (polA)
03410 Base excision repair
OCA4_c05740 (polA)
03420 Nucleotide excision repair
OCA4_c05740 (polA)
03440 Homologous recombination
OCA4_c05740 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oco03032
]
OCA4_c05740 (polA)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c05740 (polA)
Enzymes [BR:
oco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OCA4_c05740 (polA)
DNA replication proteins [BR:
oco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OCA4_c05740 (polA)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
OCA4_c05740 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCA4_c05740 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEI01724
LinkDB
All DBs
Position
complement(597200..600211)
Genome browser
AA seq
1003 aa
AA seq
DB search
MSKKPVSSAKTSAKPAGVKPPGKGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQINAVLG
FCNMLWKLMRDMPPEDRPTHLAIVFDKSEVTFRNTIYSDYKAHRPPAPDDLIPQFALIRE
AVHAFDLPCLEQGGFEADDLIATYVREACARGASATIVSSDKDLMQLVTDCVTMYDTMKD
RRLGVPEVIEKFGVPPDKVVEVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLSR
ATEIKQPKRREALIANAEKARISRQLVLLDDKVKLDVPLDELAIHEPDYRKLISFLKAME
FSTLTRRVADYAEIDASSVMPDERLKSAFAGGPSEASPQTLPLGGEPDTRARGTVSTAPV
TTLAAAPVFSPQALAASRAKDVAAAKVDRTKYATIRTADELAAWVTRAHDLGHVAIAIKA
TSFDPMQADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTAL
LESEAVLKTGFDIKFAAVLLAQHNITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHE
MIAHADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLE
RPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDINPGSPKQLGDVM
FGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLL
PQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKLVSADYSQI
ELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGIIYGIS
AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIK
ASNPSLRAFNERAAINARLQGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVP
DSEVDKTLPVIREVMEQAPFPATALSVPLRVDARAADNWDEAH
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagccagtttcctccgccaaaacttccgcaaaacccgccggggtcaagcca
cccggcaagggtgaccatgtctttctggtcgatggctcgggctacatcttccgtgcctac
cacgcgctgccgccgctgaaccgcaagtccgacggcttgcagatcaacgccgtgctcggc
ttctgcaacatgctgtggaagctgatgcgcgatatgccgccggaggatcggccaacccat
ctcgccatcgtcttcgacaagtccgaagttacgttccgcaacacgatctattccgactac
aaagcacaccgcccgcctgcgccggacgacctcattccgcagttcgcgctgatccgcgaa
gcggtgcatgccttcgatttgccctgcctcgaacagggaggcttcgaggccgacgacctg
attgcgacctatgtgcgggaagcctgcgcgcgcggcgcgagcgccaccatcgtttcttcc
gacaaagacctgatgcaactcgtgaccgactgcgtcaccatgtacgacaccatgaaggac
cgccgcctcggtgtccccgaagtgatcgagaaattcggtgtgccgccggacaaggtcgtc
gaggtgcaggcgctcgcgggcgactccgtcgataacgtgccgggcgtgccgggcatcggc
gtcaagacggccgcgcaactcatcaccgaatacggcgacctcgaaacgttgctgtcgcgc
gctacggagatcaagcagccgaagcggcgcgaggcactgatcgcgaacgccgagaaggcg
cggatttcgcgccagctcgtgctgctcgacgacaaggtgaagctcgacgtgccgctcgac
gagcttgccattcacgaaccggactatcgcaagctgatctccttcctcaaggcgatggaa
ttctcgacgctgacgcgccgcgtcgctgattatgccgagatcgatgcgtcgagcgtcatg
cccgacgagcggctgaaaagcgctttcgcaggcgggccgagcgaagcttcgccacagacg
ctgccactcggcggcgagcccgacaccagagccagggggacagtctccaccgcgccagtt
acaacgctcgcggcagcgccggtattttcaccgcaggcactggcggcctcgcgcgccaag
gacgttgccgcagcgaaggtcgatcgcaccaaatacgccaccatccgcaccgcggacgaa
ctcgcggcctgggtgacgcgcgcgcatgacctcggccatgtcgcgatcgctatcaaggcg
acgtcgttcgatccgatgcaggcggacatctgcggcatcgcgcttgcgctctcgccgaat
gaggctgcctacatcccactcggccacaagaaggccggcggcggcgacgatctgttcgca
agcgggctcgcggatggacagatcgaagccgcgaaggtgctcgaaaccctgacggcactt
ctcgaatccgaagccgtgctgaaaaccggcttcgacatcaagttcgcggccgtgctgctc
gcgcagcacaacatcacgctgcgcaccgtcgatgacgtgcaactgatgtcttacgcgctc
gatgccgggcgcagctcgcatgacatcgaggcgctggccgagcaatggctcgggcacgag
atgatcgctcatgctgacattgtcggcagtgggcgcaaccgtatctctctcgatcaggtg
gagatcccacgggccgccgaatacggcgcagagtccgccgatgtcatcatgcgactgtgg
ctcgtgttcaaggcgcggctgatctccgagcgcatgaataacgtctacgagtcgctggag
cggccgctgatcgacgtgctcgcccggatggaacggcgcggcatcatgatcgaccgccag
gtgctcgcacgtctctccggtgaatttgcccaatccgccgcgcggctcgaagcggaaatc
cgcgagattgccggcgaggacatcaatcccggcagcccgaagcaacttggcgacgtgatg
ttcggcaagatgggcctgcccggcggccagaaaaccaagaccggcgcatggtcgaccacg
gcttcgattctcgaagatctcgccgaggccggccacgacttcccgcgcaagatcctcgac
tggcggcaggtgtcgaaactgaaatcgacatacacagatgcgctgccgacccaccttctg
ccgcagacgcaacgtgtccacaccacctacgcgcttgccgcgaccaccacggggcgtctg
tcgtcgaacgaaccgaacctgcagaacattccggttcgcaccgaggacggccgcaagatc
cgccgcgccttcatcgcagcgaaggggcacaagctcgtctcggccgactattcgcagatc
gaattgcggcttctcgccgagatcgccgacattccggtgctgaagcaggcgttcaaagac
ggcctcgacattcacgcgatgacggcgtcggagatgttcggcgtgccgatcaaggacatg
ccgggcgaggtgcgccgccgcgccaaggcgatcaatttcggcattatctacggcatctcg
gcgttcgggctcgccaatcagcttggcattccgcgcgaggaagccggcgcctacatcaag
aaatatttcgagcgcttcccgggcatccgtgcctacatggacgcgacgcgtgatttctgc
cgtgagcacggctatgtcaccacgctgttcggccgcaagtgccattaccccgacatcaag
gcctcgaacccgtcgctgcgtgccttcaacgaacgggctgcgatcaacgcgcgactgcaa
ggcaccgccgccgatatcatccgccgcgcgatgatccggatggaggatgcgctgacgcaa
aagaagctcgccgcgcgcatgctgctgcaggtgcatgacgagttggtgttcgaggtcccg
gacagcgaagtggacaaaacgctccccgtcatccgcgaggtgatggagcaggcccccttc
ccggcgacggcgctgtcggtgccgttacgcgtcgatgcccgcgccgccgacaattgggac
gaggcacattaa
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