Afipia carboxidovorans OM4: OCA4_c07180
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Entry
OCA4_c07180 CDS
T01967
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCA4_c07180 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oco03019
]
OCA4_c07180 (rhlE)
Enzymes [BR:
oco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCA4_c07180 (rhlE)
Messenger RNA biogenesis [BR:
oco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OCA4_c07180 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AEI01867
LinkDB
All DBs
Position
complement(760384..761922)
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AA seq
512 aa
AA seq
DB search
MTSFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPI
LHRLLENRVRPQPKTCRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQVR
ALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPHR
RQTLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRIIQLDSSAKPATLSELL
KSEPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTLV
ATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRDI
ERLIRITLPREDRRTGGQSESAGQAAPRGRDNRHRHGAPRNGGAPRNGASHGRPGGSRQD
HNQDRPHKSAGRPAADGAGNPQRSNRHRPGAGPQQTRQAQPSAPRSEQTRHERTRPSQAG
QGGGIQGVAFLHRGSAPARPAEQPRRTRRPQR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcttttcaggatttcggtctcgccgagaccatcacgcgtgccctcagtgaggag
aactacgtcacccccaccccgatccaggcccagactatcccgatcgccattaccggtcgc
gacgtgatcggcatcgcccagaccggcaccggcaagaccgcgtccttcgcgctgccgatt
ctgcaccgcctcctcgagaaccgggttcgcccgcagcccaagacctgccgcgtactggtc
ctgagcccgacccgcgaactgtcgggccagatcctcgacagcttcaccgcctatggccgc
catctgcggcttagcgcaaccctcgccatcggcggcgtgccgatgggccgtcaggtccgc
gcattgatgggcggcgtcgaagtgctggtcgcaactcccggccggctcctcgacctcgtg
caaggcaatgcgctgaagctcggccaggtcgaattcctcgtgctcgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatccgcaaaatcgtggcgaagctgccgcaccgc
cgccagacgctgttcttctcggccaccatgccgaaggacatcgccgatctcgccgagcat
atgttgcgcgagccggctcgcgtggcggtgacgccggtgtcgtcgaccgtcgaacgcatc
gcccagcgcatcatccagctcgattccagcgccaagccggcaaccctgtcggaactgctg
aagtcggagccggtcaaccgggcgctggtctttacccgcaccaagcatggcgccgacaag
gtcgtgcgcagcctcgtcaaggccggcattcccgcggaggccatccacggcaacaaatcg
cagaaccatcgcgagcgcgtgctggccgcgttccgcaacggcgacatccgcacgctggtg
gcgaccgacatcgccgcccgcggcatcgacgtcgacggcatcacgcatgtcgtcaatttc
gacctgcccaacgtgccggaaacctacgtccatcgcatcggccgcaccgctcgcgcaggc
gccgagggcaccgcaatctcgcttgttgccggggaggagaatgcctatttgcgcgacatc
gaacgattgatccgcatcaccctgccgcgcgaagaccgccggaccggcggtcaatccgag
agcgccggacaggccgctccccgggggcgcgataaccgccaccgccacggcgcgcctcgt
aacggcggcgctccccgcaacggcgcctcccacggccgccccggcggctcccggcaagat
cacaaccaggaccgtccgcataaatcggccggccgcccggccgccgacggcgcgggcaac
ccgcagcgctcgaaccggcatcgccccggggcaggcccgcagcagacccggcaggcccag
ccgtccgctccccggtcagaacagacccggcatgagcgaactcgcccgtcgcaagcgggc
cagggaggcggtatacagggcgtcgctttcctccaccgcggcagcgcgcctgcgcgcccc
gcagagcaacctcgcagaacccggcgcccgcagcgctga
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