Afipia carboxidovorans OM4: OCA4_c08540
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Entry
OCA4_c08540 CDS
T01967
Symbol
rsmE
Name
(GenBank) ribosomal RNA small subunit methyltransferase E
KO
K09761
16S rRNA (uracil1498-N3)-methyltransferase [EC:
2.1.1.193
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oco03009
]
OCA4_c08540 (rsmE)
Enzymes [BR:
oco01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.193 16S rRNA (uracil1498-N3)-methyltransferase
OCA4_c08540 (rsmE)
Ribosome biogenesis [BR:
oco03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
OCA4_c08540 (rsmE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltrans_RNA
PUA_4
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AEI02001
LinkDB
All DBs
Position
complement(909413..910153)
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AA seq
246 aa
AA seq
DB search
MTQRDFKSPRLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQIT
GRKRLEQLTPLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQV
SRINLERMRANAIEAAEQCGILNLPEIDEPLPLTGRLAERDGKRLLVFCDEAAPQASPLA
ALKEAANDGGLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADTAAVAALALVQA
ALGDWT
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcgcgatttcaaaagcccccgcctgttcgtggacgccccgctcggagctggc
cgcgaggtcgcgctcgcacgcgagcagggccattacctcggcaatgtgctgcggctttcc
gcgagcgacaccgttctggtgttcaacggccgcgacggcgaatggcgcgcgcagatcacg
ggccgcaagcggcttgaacagctcacgccgcttgaacagacccggccgcaggacccgcct
tgcgacctgcatcttctgttcgcaccgctgaagcatgcgcggctcgattacatggtgcag
aaggcggtggagatgggcgcaagccgcctcacgccgacgctgacgcaattcacccaggtc
tcgcgcatcaatcttgagcggatgcgcgccaatgccatcgaggcggccgaacaatgcggc
attctcaatctgccggagatcgacgagcctttgccgctgaccggccgcctcgcggagcgt
gacggaaagcgccttcttgttttctgcgacgaagccgcgccgcaggcgagcccgcttgcg
gccctgaaagaagccgcaaacgacggcggcctcgacgtgctgatcggccccgaaggcggc
ttctcggaggacgagcgcgcggcgctactcgcccagccccgcctcgtccgcctctcgctc
ggcccgcgcattctgcgggcggacaccgccgccgtggcggcgctcgctttggtgcaggcc
gcgctcggcgactggacctag
DBGET
integrated database retrieval system
