Afipia carboxidovorans OM4: OCA4_c09250
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Entry
OCA4_c09250 CDS
T01967
Symbol
uvrB
Name
(GenBank) uvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCA4_c09250 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c09250 (uvrB)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCA4_c09250 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OCA4_c09250 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
nSTAND_NTPase5
DUF2963
Microtub_bd
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEI02072
LinkDB
All DBs
Position
complement(982528..985473)
Genome browser
AA seq
981 aa
AA seq
DB search
MAKNPDSPKNPPKAPRSKARRAAVKPISPALAELLNPAINRGESGIGSSTGLQPPPDNSW
DRRSGGEAAIHRARKSTPKTFDADAHHPAPPQPYSQSQGTQGGMEEKPQAIYGTSATIPT
LDPELAKQLGYDVEDDDAFRPARNKMEALGVKATAEALEALIRDGRPEFRGDKIWTPHRP
PRPEKSEGGVRLELKSEYEPKGDQPQAIKELVEGINRQDRTQVLLGVTGSGKTYTMAQVI
AATQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDS
SINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYTAMTFAMKKGERIDQRQII
ADLVALQYKRTSADFTRGTFRVRGDTIDIFPAHYEDRAWRVNLFGDTIESIEEFDPLTGH
KSDELEFVKIYANSHYVTPRPTLIQAIKNIKTELKWRLDQLHAQGRLLEAQRLEQRTTFD
LEMMEATGSCAGIENYSRYLTGRKPGEPPPTLFEYVPDNALVFTDESHVTIPQIGGMFRG
DFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPQSVAVSATPAAWELEQSGGVFVEQVI
RPTGLIDPPVHIRPARTQVDDLVGEVRETARNGYRSLVTVLTKRMAEDLTEYLHEQGIRV
RYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSET
SLIQTIGRAARNVDGKVILYADQITGSMERAIAETDRRREKQVAYNEAHGITPESVKKSI
GDILNSVYERDHVLVEVGDGGMADDTVAIGHNFETVLADLETRMREAAADLNFEEAARLR
DEVKRLRATELAVVDDPTAKQKAITGKAGAYTGTKKYGDSANLPPRADKSKPGSKSRIHK
PSLDEMGIATWHEVKPDRAEAKKPSRARKPTLDEMGPGSESRIYKPKSMREGGQEFGGVV
KGPAPRSTGGAPGHRGGWKKR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaatccagattctcccaaaaatcctccgaaagcgccgcgatcgaaagcacgc
cgcgccgcggtgaagccgatctcgcccgcgcttgcggagctgttgaatcccgcgatcaat
cgtggcgaaagcgggatcggttcctccaccggcctgcagccgccgccggacaattcctgg
gaccgccgctcgggcggcgaggccgcgatccaccgcgcacgcaaatcgacgccgaagacg
ttcgatgccgacgcgcatcatcccgctccgccgcagccctattcgcaatcgcagggcacg
caaggcgggatggaagagaagccgcaggcgatctacggcaccagcgccaccattccaacg
ctcgacccggagcttgccaagcaactcggctacgatgtcgaggacgacgacgcgttccgt
cccgcgcgcaacaagatggaggcactcggcgtcaaggcgaccgccgaagcgctggaggcg
ctgatccgcgacgggcgcccagaattccgcggcgacaagatctggacgccacatcgcccg
ccacgcccggagaaatccgaaggcggcgtgcgtctcgagttgaaatccgaatatgaaccg
aagggcgaccagccacaggcgatcaaggaactggtcgaaggcatcaaccggcaagaccgc
acgcaagtgctgctcggcgtcaccggttcgggcaagacctacactatggcgcaggtaatc
gcggcaacacagcgcccggcgctgatcctcgcgccgaacaagacgctcgcggcccagctt
tacggcgagttcaagaatttcttcccggacaacgcggtcgaatacttcgtctcgtattac
gactactaccagccggaagcttacgtcccgcgcaccgacacctatatcgagaaggattcc
tcgatcaacgaacagatcgaccgcatgcgtcactccgcgacacgtgcgctgttggagcgc
gacgacgtcattatcgttgcgtcggtgtcgtgcatctacggtatcggctcggtcgagacc
tacaccgcgatgaccttcgccatgaagaagggcgagcgtatcgaccagcggcagatcatc
gctgatctcgtggctctgcagtacaagcgcacttcggccgatttcacccgcggcaccttt
cgcgtgcgcggcgacaccatcgacatcttcccggcgcactacgaggatcgcgcctggcgc
gtgaatctgttcggcgacaccatcgagagcatcgaggagttcgatccgctcaccggccac
aaaagcgacgaactcgaattcgtcaagatctacgcgaactcgcactatgtgacgccgcgg
ccgacgctcattcaggcgatcaagaacatcaagactgagctgaaatggcggctcgaccag
ttgcatgcgcagggccggcttctggaagcgcaacgccttgagcaacgcaccacgttcgat
ctcgaaatgatggaggcgacaggaagctgcgccggcatcgagaactattcacgctatctc
accggccgcaagccgggcgagccgccgccgacgctgtttgaatatgtgccggacaacgca
ctggtgttcaccgacgaaagccacgtcacgattccgcagatcggcggcatgttccgcggc
gacttccgccgcaaggcgacgctcgccgaatacggcttccgcctgccctcctgcatggac
aaccgtccgctgcgcttcgaggaatgggacatgatgcgcccgcagtcagttgcggtgtcg
gcgacgcccgcggcatgggaactcgaacaatcgggcggcgtgtttgtcgaacaggtcatc
cgcccgaccggcctgattgatccgccggtacatattcgccccgcccgcacgcaggtcgac
gaccttgtcggcgaggtccgtgaaaccgcacgcaacggctatcgctcgctcgtcaccgtg
ctgaccaagcgcatggcggaggatctcaccgaatatctgcacgagcagggtattcgcgtc
cgctacatgcacagcgatatcgacaccatcgagcgcattgaaatcatccgcgatttgcgg
ctcggcgcgttcgatgcgctggtcggcatcaacctgttgcgcgagggcctcgacattccc
gaatgcgcactggttgcgattctcgacgccgacaaggaaggctttctacgcagcgagacc
tcattgatccagaccatcggccgcgccgcgcgcaacgtcgacggcaaggtgatcctctat
gccgatcagatcaccggctcgatggagcgcgccatcgccgaaaccgatcgccgccgcgaa
aaacaggtcgcctacaacgaagctcacggcatcacgccggagagcgtgaagaaatcgatc
ggcgacattctcaattcggtctatgagcgcgaccatgtgctggtcgaagtcggtgacggc
ggcatggctgacgacacagtcgccatcggccacaatttcgagacggtgctcgccgatctc
gaaacgcggatgcgcgaggcggctgccgatctcaatttcgaggaagcggcacgtctgcgt
gacgaggtgaagcgcctgcgtgccaccgaactcgccgtggtggacgacccaaccgcgaag
cagaaggcaatcaccggcaaggccggcgcctatactggtacgaagaaatacggcgacagc
gccaacctgccgccccgcgcggacaagtcgaagccgggaagcaagtcgcgcattcacaag
ccttcgctggatgagatgggcatcgccacctggcacgaggtgaagcccgaccgcgcggaa
gcgaagaagccgagccgtgcacgtaaaccgacgctcgatgagatgggaccgggcagcgag
agccgaatctacaagccgaaatcgatgcgcgagggcggacaggaattcggcggcgtggtc
aaaggccccgcgccacgctcaaccggcggcgcaccggggcatcgcggtgggtggaagaag
aggtag
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integrated database retrieval system
