Afipia carboxidovorans OM4: OCA4_c11840
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Entry
OCA4_c11840 CDS
T01967
Name
(GenBank) putative RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oco03009
]
OCA4_c11840
Enzymes [BR:
oco01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OCA4_c11840
Ribosome biogenesis [BR:
oco03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OCA4_c11840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Methyltransf_25
Methyltransf_31
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
BpsA_C
Motif
Other DBs
NCBI-ProteinID:
AEI02326
LinkDB
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Position
complement(1264363..1265604)
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AA seq
413 aa
AA seq
DB search
MSLERLTIDHVGQQGDGVSFDSGHALYVPYTLPNEVVDVTSSPGAQADRRGLVNIITPSA
ERIAPFCTYFGICGGCAIQHWQEDFYRAWKRQLVVDTLKQAGLVCEVGELIDAHGTGRRR
ATFHARQGSGGLRVGFAAAGRHEIVAIDRCPILDPAMEAALAAANAIAQLLKPVGKPLDI
QVSATENGLDIDVRGSGPLDTAILTKLSELADQHCLARLTRHGELVLLRAPPTIRVGRAG
VTLPPASFMQPTQAGEETLAALVIQRCKGAKRIADLFCGFGPFALRLAEKFRVAAFDSDG
KAIDALNNAVRATQGLKPLTAVARDLFRRPLVPQELREFDCVVFDPPRQGAEAQSRQLAA
SRLSRVVAVSCNPATFARDARILTGGGFRLASVSPVDQFRHTAHVELVADFIR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgagcgcctcaccatcgaccatgtcggccagcagggcgacggcgtgtcgttc
gacagcggacacgcactctacgtgccctacacgcttcccaatgaagtcgtcgacgttacc
tcctcgcccggcgcacaagccgatcgccgcgggctggtgaatatcatcaccccgagtgcg
gaacgcatcgcaccgttctgcacctatttcggcatttgcggcggctgtgcgatccagcat
tggcaagaggatttctatcgtgcctggaagcgccagcttgttgtcgacacgttgaagcag
gcaggcttggtttgcgaggtcggcgaactgatcgatgcccatggcaccggccgccgccgc
gccacattccacgcgcgacaggggtcgggcggactgcgtgttggtttcgccgcggcggga
cgacacgagattgtcgccatcgaccgctgccccattctcgatccggcaatggaggccgcg
cttgccgccgccaatgcgattgcgcagctactaaagcccgtcggcaaaccgctcgatatt
caggtgagcgcgaccgagaacggcctcgacatcgatgtacgtggctctggtccgctcgat
acggcgatcttaacaaagctgtccgagctcgcggaccagcattgcctcgcccgcctgaca
cgccatggcgaactcgttctgctgcgcgcgccaccaaccatccgcgtcggccgagcaggc
gtgacactgccgcccgcctccttcatgcagccaacacaagccggtgaagaaacgctcgct
gctctcgtcattcagcgctgcaaaggcgcgaagcggatcgccgacctgttctgcggcttc
ggcccgttcgcgctgcggctcgcggaaaaattccgcgtggccgctttcgacagtgacggc
aaggcgatcgacgcgctgaataacgccgtccgcgccacgcaggggttgaagccgctcacg
gcggtggcgcgcgatctgtttcgccggccgctggtgccgcaggagctacgcgagttcgac
tgcgtcgtgttcgatccgccgcgccagggcgctgaggcccaaagccgccagcttgccgcc
agccgcctgtcccgggtggtcgccgtctcgtgcaatcccgcgaccttcgcccgtgacgca
cgaatcctgaccggcggcgggttcaggctcgcaagcgtcagcccggtggatcagttccgc
catacggcccatgtcgaactcgtcgcggactttatccgctag
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