Afipia carboxidovorans OM4: OCA4_c15520
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Entry
OCA4_c15520 CDS
T01967
Symbol
ybdL
Name
(GenBank) aminotransferase YbdL
KO
K14267
N-succinyldiaminopimelate aminotransferase [EC:
2.6.1.17
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco00300
Lysine biosynthesis
oco01100
Metabolic pathways
oco01120
Microbial metabolism in diverse environments
oco01230
Biosynthesis of amino acids
Module
oco_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
OCA4_c15520 (ybdL)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
oco01007
]
OCA4_c15520 (ybdL)
Enzymes [BR:
oco01000
]
2. Transferases
2.6 Transferring nitrogenous groups
2.6.1 Transaminases
2.6.1.17 succinyldiaminopimelate transaminase
OCA4_c15520 (ybdL)
Amino acid related enzymes [BR:
oco01007
]
Aminotransferase (transaminase)
Class I
OCA4_c15520 (ybdL)
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Motif
Pfam:
Aminotran_1_2
DegT_DnrJ_EryC1
Aminotran_5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
AEI02692
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Position
1680052..1681203
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AA seq
383 aa
AA seq
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MSTIFSDLPVTIFEVMSQLARDHDAINLGQGFPDGPGPEDIRQKAADAVLNGYNQYPSMM
GLPELRSAIASHYAHWHGVTFDPATEVMVTSGATEALAGAILGLVGPGDEVVVFQPFYDA
YVPLIRRAGGTVRFVPLKPPDWRLTEEALRAAFTPKTKFVIFNNPLNPAAVVYPREDLEL
LARFCQEFDAVAICDEVWEHIVFDGREHIPLIAIPGMRERTVKIGSAGKIFALTGWKVGF
VCAAPALLRVLAKAHQFLAFTTAPNLQVAVAYGLGKPDSYFTTMRAELAKSRDRLTNGLR
AIGFPVLQSQGTYFLNVDLAPLGLNETDEAFCKRVAIEHKVASIPVSPFYEEEPVTSVVR
FCFAKSDATLDAALERLSRVLRP
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgattttctccgatcttccggtgacgattttcgaggtgatgtcgcagctcgcg
cgcgaccacgacgccatcaatctggggcagggctttcccgacgggccggggccggaggac
atccgccagaaggccgccgacgccgtgctcaatggctacaatcaatatccttccatgatg
ggattgccggagctgcgatccgcgatcgcgagccactacgcgcactggcacggcgtgacg
ttcgatcccgcgaccgaagtgatggtgacgtcgggcgcgaccgaagcgctggcgggcgcg
atcctcggtcttgtcgggccgggcgacgaggtggtggtcttccagccgttctacgacgcc
tatgtgccgctgatccgccgcgcgggcggcaccgtgcggttcgtgccgctgaagccgccg
gactggcgactgaccgaggaggcgctgcgggcggccttcaccccgaaaaccaaattcgtg
atcttcaacaatccgctcaatccggcggcggtggtgtatccgcgcgaggacctcgaattg
ctggcgcgcttctgccaagagttcgatgcggtcgcgatctgcgacgaggtgtgggaacac
atcgtgttcgatggccgcgaacatattccgctgatcgccattcccggcatgcgcgagcgc
acggtgaagatcggctccgcgggcaagatcttcgcgctgaccggctggaaggtcggtttc
gtctgtgccgcgcccgcgttgctgcgcgtgctggccaaggcgcaccagtttctcgccttc
accacggcgccgaacctgcaggttgcggtggcctatgggctcggcaagcccgatagttac
ttcaccacgatgcgtgccgagcttgcgaaaagtcgcgaccggctgacgaatggcctgcgc
gccatcggctttccggtgctgcaatcgcagggcacgtatttcctcaatgtcgatcttgcg
ccgcttgggttgaacgagaccgacgaagcgttctgcaagcgtgttgcgatcgagcacaag
gtcgcctcgattccggtgtcgcctttctacgaggaagaaccggtgacatcggtggtgcgg
ttctgcttcgcgaaatcggatgcgacgctcgacgccgcgctggagcggttgtcgcgcgta
ctgcggccgtaa
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