Afipia carboxidovorans OM4: OCA4_c17970
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Entry
OCA4_c17970 CDS
T01967
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oco03032
]
OCA4_c17970 (gyrA)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c17970 (gyrA)
Enzymes [BR:
oco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
OCA4_c17970 (gyrA)
DNA replication proteins [BR:
oco03032
]
Prokaryotic type
DNA Topoisomerases
OCA4_c17970 (gyrA)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OCA4_c17970 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
AEI02935
LinkDB
All DBs
Position
1944418..1947135
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AA seq
905 aa
AA seq
DB search
MTDPKDPTESGSGPVDIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG
MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS
VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGA
GGIAVGMATNIPPHNLGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRS
AYHLGRGSIVMRGKVSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDL
RDESDREGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT
VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMS
RDWPARDVETMMMLIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDK
LAVEIADYLDILRSRARVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMV
VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY
KEKVWRLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRR
NKLSDFVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGR
TSMGVRGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRRGGADDEAGTDHEEATG
AIELGEQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRNGKLIG
SFPVDDSDQIMLVTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTDEGEH
PSDEE
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgacccgaaagatccgacggagagcggctccggccccgtcgatatcaaacccgtt
tccatttccgatgaaatgaagcgctcgtatctcgattacgcgatgagcgtgatcgtgtcg
cgcgcgctgcccgatgcgcgcgacggcctgaagccggtgcatcgacgcattctctacggc
atgtacgagaacggttttgagtggaacaagccgtaccggaagtcggcgcgtacggtcggc
gacgtcatcggtaagtatcatccgcacggcgaccagtcggtctacgacgccttggtgcgt
atggcgcaggacttttcaatgcgcgtgccgctgatcgatggtcagggcaatttcggctcg
gtcgatggcgatatgccggcggcaatgcgttacaccgagtcgcgtctgcagaagatcgcg
cattcgctgctcgacgatatcgacaaggacaccgtcgacttccagccgaactacgacgcc
tccgagcgcgagccgaaggtgctgccggcaaagtttccgaacttgctggtcaacggcgcg
ggcggcatcgctgtcggcatggcgaccaacattccgccgcataatctcggcgaggtgatc
gacgcctgcatcgcactgatcgacaatccagcgctcggcatcgacgatctgatcaacatc
gtgccgggaccggattttccgaccggcggcatcattctcggacgccagggcatccgttcg
gcctatcatctcggccgcggctcgatcgtgatgcgcggcaaggtttcgatcgagaccatc
cgcaaggatcgcgaagcgatcgtcgtttccgaaattccctatcaggtgaacaaggcgacg
atggtcgagcgcattgccgagctcgtgcgcgataagaagatcgaaggcgtctccgacctg
cgcgacgagtccgaccgcgagggctatcgcgtcgtcgtcgagttgaagcgcgacgcggtg
ccggacgtggtgctgaaccagctctacaagttcacgccgttgcagacgagcttcggcgcc
aacatggtggcgctcgacggcggccggccgcaggtgatgaacctcaaggacctactgacg
gtgttcgtcgccttccgcgaaaacgtcgtatcgcggcgcacgaaattcctgctcaacaag
gcgcgagaccgtgcccacatcttggtcggcctcgcgattgccgttgccaatatcgacgaa
gtgatccgcgtgatccgtacgtcgcccgatccggcgaccgcacgcgatacactgatgtcg
cgcgactggcctgcgcgtgacgtcgaaaccatgatgatgttgatcgatgatccgcgccat
cgcattgccgaggacggcacggcgcggctgtcgatggagcaggcgaaggcgatcctcgat
ctgcgtctgcagcgcctcaccgcgctgggtcgcgacgagatttccgaagagctcgacaag
ctcgcggtcgagattgccgactatctcgacatcctgcgctcgcgcgcccgtgtgcaggac
atcgtccgcaatgaactcaacgcgatcaaggaagagttcgcgacgccgcggcgcacgatg
attatcgatcaggaaggcgaggtcgaggacgaggacctgatccagcgcgaggatatggtc
gtcaccgtgtcgcacgcgggttacgtcaagcgcgtgccgctttcgacctatcgcgcgcag
aagcgtggcggcaagggtcgttccggcatgcagacccgcgaggaggatttcgtcgcgcgg
ctgttcgtggcctcgacccatacgccagtgctgttcttctcctcgcgcggacaggtctac
aaggaaaaggtctggcggctgccgatggcggcgccgagcgcgcgcggtaaggcactcatc
aacattctgccgatggagcagggcgagcgcatcaccaccatcatgccgctgccggaggat
gagtcctcatggggcgagctcgatgtgatgttcgccaccaccggcggcaatgtccgccgc
aacaagctgtcggatttcgtcgatgtgcgtcgctccggcatcatcgcgatgaagctcggc
gagggcgaggccattgttgacgtgcagatctgcaaggagaacgacgacgtcctgctcacc
gccgcaggcgggcagtgcattcgcttccccatcaccgatgtccgcgtattccagggtcgc
acctcgatgggtgtgcgcggtatcacgcttggcgagggtgacaggctgatctcgctcacc
attctgcgccatatggatgttagtgccgatgagcgcgcggcgtatctgcgccgtgccaat
gcggtacgccgtggcggcgcggatgacgaggcggggaccgaccacgaggaagccaccggt
gcgatcgaactcggcgagcagcgctatgtcgagatgtcggcaaacgaacagttcgtgctg
accatcagcgagaacggctacggcaaacgctcgtcgtcctacgaataccggaccacggga
cgcggcggcaaaggcatcgtcgcgatgtcggtcaatgaccggaacggcaagctcattggc
tccttcccggtcgatgacagtgaccagatcatgctcgtcaccgacaagggccagcttatc
cgctgtccggtcgaggacatccgcatcgtcggccgctcgacgcagggcgtgaccgtcttc
aatacggcggatgacgaacgcgtggtctcggtcgaacgcctcaccgacgagggcgaacat
ccctccgacgaggagtag
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