Afipia carboxidovorans OM4: OCA4_c20180
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Entry
OCA4_c20180 CDS
T01967
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
Organism
oco
Afipia carboxidovorans OM4
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEI03149
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Position
2188148..2189557
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AA seq
469 aa
AA seq
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MSFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPML
TMLEKGRARARMPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLM
RGVDILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQT
LFFTATMPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLR
DAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLV
ASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILAI
EKLIGQSIPHAEGSAPSSASSHEDGEQASESRSAPRKSRRGGQRTRQREKTASKPANGSP
RPAAKAPAAQPPSLGRIPMAAAVQDHQSEPADHSHLPAFLLRPIRARAR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttctcatctcggcctttccgaaaaggtcctcgctgcggttgccgccaccggc
tacaccacccccacccccattcaagaacaagctattccccacgtcctcgcccggcgcgac
gttctcggcatcgcccagaccggcaccggcaagacggcggcgttcgtgctgccgatgctg
acgatgctggaaaagggccgcgcccgcgcccgcatgccccgcacgctcattctcgagccc
acgcgcgaactcgccgcacaggtgcaggagaacatcgatcactattgcgccggccagaaa
ctcaacatcgcgctcctgatcggcggcatgtcgttcggcgaccaggatgccaagctgatg
cgcggcgtcgatatcctgatcgcgacgccgggccgcctgctcgaccataccgagcgcggc
aagctgttgctgaccggcgtcgaaatgctggtgatcgacgaagccgaccgcatgctcgac
atgggcttcatcccggacatcgagcgcatctgcaagctcgtcccgttcacccgccagacc
ctgttcttcaccgcgacgatgccgccggaaatccgccgcatcaccgagaccttcctgcac
aatcccgagaaggtcgagatttcgcgccccgcttcgaccgcaaccacggtcacccagtcc
cagatcggcatcggcagcgacgcgcatgcaaagcgcgaactccttcgccagcttctgcgc
gatgccaaggatttgaagaacgccatcatcttctgcaaccgcaagcgcgacgtcgcgatc
ctgcacaagtcgctgcagaagcacggcttcggcgccgccgcgctgcacggcgacatggac
cagagcgcgcgcatgactgcgctcgatcagttccgcaaaggtgagttgccgcttcttgtc
gcttccgacgttgccgcccgcggcctcgacattccggaagtgagccacgtcttcaacttc
gacgtcccctatcatcccgacgactacgttcaccgcatcggccgcaccggccgcgccggc
cggctcggcaccgcgatctcgatcgtatcgcccaccgaccagaaatcgatcctcgcgatc
gagaagctgatcggccagtcgatcccgcacgcggaaggcagtgccccgtcgtcagcctca
tcgcacgaggatggtgaacaggcgagcgagtcccgctccgctccgcgcaaatcacggcgc
ggcggccagcgtacgcggcagcgcgagaagaccgcttccaagcctgccaatggttcgccg
cggcccgctgccaaggcacctgcggcgcagcctccctcgctcggacgcatccccatggct
gctgcagtgcaagatcatcagtcggagccagccgatcactcgcaccttccggcatttctg
ctccgccctatccgcgcccgcgcaagataa
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