Afipia carboxidovorans OM4: OCA4_c20690
Help
Entry
OCA4_c20690 CDS
T01967
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03030
DNA replication
oco03430
Mismatch repair
oco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OCA4_c20690 (dnaE1)
03430 Mismatch repair
OCA4_c20690 (dnaE1)
03440 Homologous recombination
OCA4_c20690 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oco03032
]
OCA4_c20690 (dnaE1)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c20690 (dnaE1)
Enzymes [BR:
oco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OCA4_c20690 (dnaE1)
DNA replication proteins [BR:
oco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OCA4_c20690 (dnaE1)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OCA4_c20690 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HHH_3
DUF6282
HROB
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
AEI03200
LinkDB
All DBs
Position
complement(2255646..2259119)
Genome browser
AA seq
1157 aa
AA seq
DB search
MASPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAGL
GIQPIIGCALAVDFGDVDPAARNAAALAPARIVLLAPTEDSYRSLMRLNSRAFLEMPAQQ
TPHIKAEWLEQERTGLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYLELQR
HGLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAETERAH
LTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMADAVS
KENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVSDFIK
WAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDIDFCQD
RRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAA
PVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVP
LYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAHLPLD
DKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCAR
KHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAE
MEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHYP
VEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLAALKG
VGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRAAVFA
GADAILAACQRSHEEAVLGQSDMFGGQTGGPVITLPHVEPWLPAERLQREYGAVGFFLSG
HPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDP
TGHFEAVLFSEGLGQFRELLEPGLAVLLQLSAELQGEDVRARIANVELLDQAAAKTSMAL
KIFLRDDKPLESIRRRLEDHARGGGAGSSARAGEVTLVMMLDLETEVEMRLRDRYKVSPQ
IAGALKAITGVVDVQTL
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcccggatttatccatcttcacgttcactcggcctattcgctgctgcagggc
tcgatgaagaccgagaagctcgcggctctcgccaaggccgacaaccagcccgcgttggcg
ctgaccgaccgcgacaatatgttcggcgcgctggaattctccgagaagcttgcgggcctc
ggcatccagccgatcatcggctgcgcgcttgcggtcgatttcggcgacgtcgatcccgcc
gcgcgcaatgcggccgccctcgcgcccgcccggatcgtcctgctcgcgccgaccgaggac
agctatcgcagcctgatgcggctcaactcgcgcgcgttcctcgaaatgcctgcccagcag
acgcctcacatcaaggccgagtggctggagcaggaaaggaccggcctgatcgcgctgacc
ggcggaccggaggggccgatctcgcaggcgctcatggccgagcatcccgaacttgctctc
cagcgggtggaaaagctcgcggacctgttcggcgaccggctttatctcgaactgcagcgc
cacggcctcgacagcgaacggcggatcgagagcgcgctgatcgacatcgcctatggcaag
gggctgccgctcgttgcgaccaacgagccgtatttcgcgaccgtcgaggattacgaatcc
cacgacgcgctgctgtgcatcgcgggcgggcggcttctcgcggagaccgagcgcgcgcac
ctcacgcccgatcatcgcttcaagactcgcgccgagatggcggtgctgttcgccgacctg
ccggaagcgctcgcctcgacggtcgagatcgcgcagcgctgcgccttccgtccgcgtaag
cgcaaaccgatcctgccgcacttcaccgtcgacagcgatcacatggccgatgcggtcagc
aaggaaaacgccgagcttcagaagcaggcggaggaaggtctcgcacggcggctcaaggcg
cacggcctcgccgagggcaagactgaagaagactaccgcacgcgccttgcctacgagatg
agcgtcatcacccgcatgaattattcgggttacttcctcatcgtgtccgacttcatcaag
tgggcgaagtcgcaaggcattccggtggggccggggcgcggctcgggcgcaggctcgctc
gtggcctacgcgctcaccatcaccgatctcgatccgctgcggttcgcgcttctgttcgaa
cgcttcctcaatcccgagcgcgtgtcgatgccggacttcgacatcgatttctgtcaggac
cgccgcggcgaggtgatcgattacgtgcagcgccgctacggcgccgaccatgtcgcgcag
atcattaccttcggtacgctgcaggcgcgcggcgtgttgcgcgacgtcggccgtgtgctg
cagatgccttacggccaggtcgacaagctgaccaagctcgtgccgcagaatccggcggcc
cccgtgacgctcgccaaggcgatcgagggcgaaccgaagctgcaggccttccgcgacgaa
gacccggtggtcgcgcgtgccttcgacattgcccagcgtctcgagggactgacgcgccac
gcctcgacccacgccgcgggcatcgtgatcggtgaccggccgctctccgaactcgtgccg
ctctatcgcgatccgaaatcggacatgccggtcacccagttcaacatgaaatgggttgag
cccgcgggcctcgtaaaattcgacttcctcggcctcaagacgctgacggttctcgacgtc
gcggtgaagctcttgaaacagagcaacatccacgtcgatcttgcgcacctgccgctcgac
gacaaacaaacctacgacatgctgacccggggcgatgtggtcggcgtgttccaggttgaa
agtcagggcatgcggcgcgcgctcgtcgatatgcggcccgaccgcttcgaggacatcatc
gcgctcgtcgcgctctatcgtccgggcccgatggcgaacatcccgacctattgcgcgcgc
aagcacggcgacgaggagcccgaatatctgcacccggtgctggagccgatcctgaaagag
acgttcggcgtcatcatctatcaggagcaggtgatgcagatcgcgcaggtgatggcgggc
tattcgctcggagaagccgacctgctgcgccgcgcgatgggcaagaagatccgtgccgag
atggaaaagcagcgcgtgcgctttgtttcgggctcggtcgagcacagcatctccaagtcg
caggctgaccagattttcgaactgctcgcgaagttcgccgactacggcttcaacaagagc
catgctgcggcttatgcgctcgtgtcctaccagaccgcctacatgaaggcgcattatccg
gtggagttcatcgccgcgtcgatgacactcgataccggcaacaccgacaagctctctgaa
ttccgcgccgaagcgcagcgcctcggtatcaaggtcgagccgccgtcgatcaatcgctcg
gaaggcaccttcactgtcggtgagaacacgatcttttattcgctcgccgcgctgaagggg
gtgggaacgcatgccgtcgacatgatcgtcgaggcgcgcaagaacggcgggccattcacc
tcgctgtcggattttgccgcgcgcgtgccgccgcgcgcgatcaacaagcgcgtgctggaa
agccttgccgccgccggcgcgttcgacacgatcgagccgaaccgtgctgcggtgttcgcg
ggcgccgatgcgatcctcgctgcctgtcagcgcagccacgaggaggcagtgctcggccag
agcgatatgttcggcggacagaccggcgggccggtcatcacgctgccgcatgtcgagccg
tggctgccggccgagcggctgcagcgcgaatacggcgcggtcggcttcttcctctccggc
catccgctcgatgattacaaggtcgtgctgcagcggctcaacgtgcagtcgtgggcggag
tttgcgagcgccgtgaagaatggccgcaccgcgggcaaggttgccgcgacggtggtctcg
cgcatggagcggcgcaccaagaccggtaacaagatggggatcatcgggctctccgatccc
accggacacttcgaggctgtgctgttctccgaaggactcggccaattccgcgaattgctg
gagccggggctggcggtgcttctgcagctcagcgcggagttgcagggcgaggacgtgcgc
gcgcgcatcgccaatgttgagctgctcgatcaggcggcggcgaagacctcgatggcgctg
aagatttttctgcgcgacgacaagccgctggaatcgatccgccgccgtctcgaggatcat
gcgcgcggaggcggcgcgggatcgtccgcacgcgcgggcgaagtcacgctggtgatgatg
cttgatcttgaaaccgaggtcgaaatgaggctgcgcgaccgctacaaagtgtcgccgcag
attgcgggcgcgctgaaggcgattaccggcgtcgtcgatgtacagacgctttag
DBGET
integrated database retrieval system
