Afipia carboxidovorans OM4: OCA4_c21810
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Entry
OCA4_c21810 CDS
T01967
Name
(GenBank) uracil-DNA glycosylase family protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCA4_c21810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c21810
Enzymes [BR:
oco01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
OCA4_c21810
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OCA4_c21810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AEI03308
LinkDB
All DBs
Position
2368809..2369525
Genome browser
AA seq
238 aa
AA seq
DB search
MTKISTTEARSGAGRRTASRRASSPSLSDTSHPGHDCPLCPRLVEFREANRAAHPDWFNG
PVPPLGGRDAAVLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEFGFASGRYEARPDD
TLKLVDCRIGNAVHCVPPQNKPTPAEINTCRQFLVSTIKDMPRLKAIVTLGRISHDSTLK
ALGLPLRAAPFKHGGEFQHGALRVFSSYHCSRYNTNTGVLTPAMFRAVFASVRDYLDR
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatttcgacgactgaagccagatccggcgcggggcggcgaaccgcctcgcgc
cgcgcttcctccccttccctttccgacacatcgcatcccggccacgactgcccgctctgc
ccgcggcttgtcgaattccgcgaagcgaaccgcgccgcgcatcccgactggttcaatggc
cccgtgccgccgctcggcgggcgtgatgcggcggtgctcatcgtcggcctcgcgccgggg
ctgcaaggcgcgaaccgcaccgggcggccgttcaccggcgactatgcgggtgaccttctg
tacgcgacgctgctcgaattcggatttgccagcggccggtacgaggcgcgaccggacgat
acgttgaagctcgtcgattgccggatcggcaacgccgtgcattgcgtgccgccgcagaac
aagccgacaccggccgagatcaacacctgccggcagtttctggtctcgacgatcaaggac
atgccgcgcctgaaggcgatcgtcacgctcgggcgcatctcgcacgactcgacgctgaag
gcgctcggcctgccgctgcgcgccgcgccgttcaagcatggcggcgaattccagcacggc
gcgctgcgcgtgttcagcagctatcactgctcgcgttacaacaccaacaccggcgtgctg
acgcccgcgatgtttcgcgcggtgtttgccagcgtgcgggattatctggatcggtag
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